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    COLEC12 collectin subfamily member 12 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 468616, updated on 29-Mar-2024

    Summary

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    Official Symbol
    COLEC12provided by VGNC
    Official Full Name
    collectin subfamily member 12provided by VGNC
    Primary source
    VGNC:VGNC:13250
    Locus tag
    CK820_G0018548
    See related
    Ensembl:ENSPTRG00000009818
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    See COLEC12 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 17 NC_072415.2 (30415823..30606673)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 18 NC_072416.1 (29341068..29531918)

    Chromosome 17 - NC_072415.2Genomic Context describing neighboring genes Neighboring gene clusterin like 1 Neighboring gene centrin 1 Neighboring gene THO complex subunit 1 Neighboring gene ubiquitin specific peptidase 14

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in collagen-containing extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    collectin-12
    Names
    collectin placenta 1
    collectin sub-family member 12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072415.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      30415823..30606673
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016933415.4 → XP_016788904.1  collectin-12

      UniProtKB/TrEMBL
      A0A2I3SE48, A0A2J8MPD4, A0A6D2X7Q6, H2QE65, K7DKK3
      Related
      ENSPTRP00000016708.4
      Conserved Domains (2) summary
      cd03590
      Location:607 → 732
      CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
      cl25732
      Location:77 → 350
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein
    Heading Accession and Version

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