RBMS2 RNA binding motif single stranded interacting protein 2 [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: RBMS2provided by VGNC
Official Full Name: RNA binding motif single stranded interacting protein 2provided by VGNC
Primary source: VGNC:VGNC:10080
Locus tag: CK820_G0046628
See related: Ensembl:ENSPTRG00000005104
Gene type: protein coding
RefSeq status: MODEL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 12

Exon count:: 19

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	10	NC_072408.2 (39398835..39493378, complement)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	12	NC_072410.1 (38069178..38163384, complement)

Chromosome 10 - NC_072408.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Markers

D9S1880 (e-PCR), detects polymorphism
- UniSTS:73745

D7S2105E (e-PCR)
- UniSTS:37139

GDB:434012 (e-PCR)
- UniSTS:157204

SHGC-58278 (e-PCR)
- UniSTS:25387

D5S2354 (e-PCR)
- UniSTS:473392

D8S2279 (e-PCR)
- UniSTS:473907

A008S22 (e-PCR)
- UniSTS:57440

RH44533 (e-PCR)
- UniSTS:24197

SHGC-67307 (e-PCR)
- UniSTS:89991

T15358 (e-PCR)
- UniSTS:25247

STS-N33267 (e-PCR)
- UniSTS:43428

RH102603 (e-PCR)
- UniSTS:96937

RH69868 (e-PCR)
- UniSTS:15021

L18441 (e-PCR)
- UniSTS:71348

L17971 (e-PCR)
- UniSTS:43966

D12S1881 (e-PCR)
- UniSTS:6599

SHGC-132980 (e-PCR)
- UniSTS:170962

D13S1639 (e-PCR)
- UniSTS:473568

D15S1390 (e-PCR)
- UniSTS:474340

BAZ2A_3784 (e-PCR)
- UniSTS:462056

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables mRNA 3'-UTR binding	IEA Inferred from Electronic Annotation more info	PubMed
enables poly(A) binding	IEA Inferred from Electronic Annotation more info	PubMed
enables poly(U) RNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed
located_in cytosol	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: RNA-binding motif, single-stranded-interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_072408.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

39398835..39493378 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_009425104.4 → XP_009423379.1 RNA-binding motif, single-stranded-interacting protein 2 isoform X16

UniProtKB/TrEMBL

H2Q693

Conserved Domains (2) summary

cd12471
Location:51 → 134

RRM1_MSSP2; RNA recognition motif 1 (RRM1) found in vertebrate single-stranded DNA-binding protein MSSP-2

cd12474
Location:135 → 220

RRM2_MSSP2; RNA recognition motif 2 (RRM2) found in vertebrate single-stranded DNA-binding protein MSSP-2
XM_054663171.2 → XP_054519146.1 RNA-binding motif, single-stranded-interacting protein 2 isoform X13
XM_054663170.2 → XP_054519145.2 RNA-binding motif, single-stranded-interacting protein 2 isoform X11
XM_054663168.2 → XP_054519143.1 RNA-binding motif, single-stranded-interacting protein 2 isoform X10
XM_054663160.2 → XP_054519135.2 RNA-binding motif, single-stranded-interacting protein 2 isoform X2
XM_009425106.4 → XP_009423381.1 RNA-binding motif, single-stranded-interacting protein 2 isoform X17

See identical proteins and their annotated locations for XP_009423381.1

UniProtKB/TrEMBL

H2Q693

Conserved Domains (2) summary

cd12471
Location:51 → 134

RRM1_MSSP2; RNA recognition motif 1 (RRM1) found in vertebrate single-stranded DNA-binding protein MSSP-2

cd12474
Location:135 → 220

RRM2_MSSP2; RNA recognition motif 2 (RRM2) found in vertebrate single-stranded DNA-binding protein MSSP-2
XM_001168729.8 → XP_001168729.1 RNA-binding motif, single-stranded-interacting protein 2 isoform X14

See identical proteins and their annotated locations for XP_001168729.1

UniProtKB/TrEMBL

A0A2I3THQ7, A0A2J8Q1R9, A0A6D2XBV4, H2Q693

Related

ENSPTRP00000088778.1

Conserved Domains (2) summary

cd12474
Location:135 → 220

RRM2_MSSP2; RNA recognition motif 2 found in vertebrate single-stranded DNA-binding protein MSSP-2

cl17169
Location:49 → 134

RRM_SF; RNA recognition motif (RRM) superfamily
XM_054663167.2 → XP_054519142.1 RNA-binding motif, single-stranded-interacting protein 2 isoform X10
XM_009425097.5 → XP_009423372.1 RNA-binding motif, single-stranded-interacting protein 2 isoform X3

Conserved Domains (2) summary

cd12471
Location:51 → 134

RRM1_MSSP2; RNA recognition motif 1 (RRM1) found in vertebrate single-stranded DNA-binding protein MSSP-2

cd12474
Location:135 → 220

RRM2_MSSP2; RNA recognition motif 2 (RRM2) found in vertebrate single-stranded DNA-binding protein MSSP-2
XM_054663163.2 → XP_054519138.1 RNA-binding motif, single-stranded-interacting protein 2 isoform X7
XM_054663158.2 → XP_054519133.1 RNA-binding motif, single-stranded-interacting protein 2 isoform X24
XM_009425108.5 → XP_009423383.1 RNA-binding motif, single-stranded-interacting protein 2 isoform X20

Conserved Domains (2) summary

cd12470
Location:49 → 134

RRM1_MSSP1; RNA recognition motif 1 in vertebrate single-stranded DNA-binding protein MSSP-1

cd12474
Location:135 → 220

RRM2_MSSP2; RNA recognition motif 2 found in vertebrate single-stranded DNA-binding protein MSSP-2
XM_054663161.2 → XP_054519136.1 RNA-binding motif, single-stranded-interacting protein 2 isoform X4
XM_054663162.2 → XP_054519137.1 RNA-binding motif, single-stranded-interacting protein 2 isoform X6
XM_054663178.2 → XP_054519153.1 RNA-binding motif, single-stranded-interacting protein 2 isoform X23
XM_054663177.2 → XP_054519152.1 RNA-binding motif, single-stranded-interacting protein 2 isoform X23
XM_054663164.2 → XP_054519139.1 RNA-binding motif, single-stranded-interacting protein 2 isoform X8
XM_054663173.2 → XP_054519148.1 RNA-binding motif, single-stranded-interacting protein 2 isoform X15
XM_009425107.5 → XP_009423382.1 RNA-binding motif, single-stranded-interacting protein 2 isoform X19

See identical proteins and their annotated locations for XP_009423382.1

UniProtKB/TrEMBL

A0A2I3SQ38, A0A2J8Q1R1, A0A6D2WN28

Conserved Domains (2) summary

cd12474
Location:135 → 220

RRM2_MSSP2; RNA recognition motif 2 found in vertebrate single-stranded DNA-binding protein MSSP-2

cl17169
Location:49 → 134

RRM_SF; RNA recognition motif (RRM) superfamily
XM_054663169.2 → XP_054519144.1 RNA-binding motif, single-stranded-interacting protein 2 isoform X10
XM_016923185.4 → XP_016778674.1 RNA-binding motif, single-stranded-interacting protein 2 isoform X12
XM_016923183.4 → XP_016778672.1 RNA-binding motif, single-stranded-interacting protein 2 isoform X5

UniProtKB/TrEMBL

H2Q693
XM_054663165.2 → XP_054519140.1 RNA-binding motif, single-stranded-interacting protein 2 isoform X9
XM_054663159.2 → XP_054519134.1 RNA-binding motif, single-stranded-interacting protein 2 isoform X1
XM_054663174.2 → XP_054519149.1 RNA-binding motif, single-stranded-interacting protein 2 isoform X18
XM_054663172.2 → XP_054519147.2 RNA-binding motif, single-stranded-interacting protein 2 isoform X22
XM_054663166.2 → XP_054519141.2 RNA-binding motif, single-stranded-interacting protein 2 isoform X21