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    ell2.S elongation factor, RNA polymerase II 2 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 447018, updated on 11-Apr-2024

    Summary

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    Official Symbol
    ell2.S
    Official Full Name
    elongation factor, RNA polymerase II 2 S homeolog
    Primary source
    Xenbase:XB-GENE-865476
    Locus tag
    XELAEV_18010811mg
    See related
    EnsemblRapid:ENSXLAG00005026370
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    ell2; xell2
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    Genomic context

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    Location:
    chromosome: 1S
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (165298736..165331297)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (149296113..149327622)

    Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene calpastatin Neighboring gene proprotein convertase subtilisin/kexin type 1 S homeolog Neighboring gene uncharacterized LOC121399507 Neighboring gene glutaredoxin S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Clone Names

    • MGC82755

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within snRNA transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of transcription elongation factor complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RNA polymerase II elongation factor ELL2; elongation factor, RNA polymerase II 2 S homeolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      165298736..165331297
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041580462.1 → XP_041436396.1  RNA polymerase II elongation factor ELL2

      UniProtKB/TrEMBL
      A0A1L8HR64, A0A974DVH0
      Related
      ENSXLAP00005078629.1, ENSXLAT00005080220.1
      Conserved Domains (2) summary
      pfam07303
      Location:522 → 623
      Occludin_ELL; Occludin homology domain
      pfam10390
      Location:7 → 286
      ELL; RNA polymerase II elongation factor ELL

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001093660.1: Suppressed sequence

      Description
      NM_001093660.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
    Nucleotide Protein Strain
    Heading Accession and Version

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