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    hpcal1.L hippocalcin-like 1 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 446902, updated on 6-Oct-2023

    Summary

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    Official Symbol
    hpcal1.L
    Official Full Name
    hippocalcin-like 1 L homeolog
    Primary source
    Xenbase:XB-GENE-6254872
    Locus tag
    XELAEV_18028042mg
    See related
    EnsemblRapid:ENSXLAG00005023769
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    hpcal1
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    Genomic context

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    Location:
    chromosome: 5L
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (149293573..149387543)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (138220745..138314770)

    Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene ribonucleotide reductase M2, gene 2 L homeolog Neighboring gene ribonucleotide reductase M2, gene 1 L homeolog Neighboring gene ornithine decarboxylase 1 L homeolog Neighboring gene nucleolar protein 10 L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC81263

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    hippocalcin-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001093598.1 → NP_001087067.1  hippocalcin-like protein 1

      See identical proteins and their annotated locations for NP_001087067.1

      Status: PROVISIONAL

      Source sequence(s)
      BC077976
      UniProtKB/Swiss-Prot
      Q6DCM9
      UniProtKB/TrEMBL
      A0A974HK63
      Related
      ENSXLAP00005070377.1, ENSXLAT00005071917.1
      Conserved Domains (1) summary
      COG5126
      Location:13 → 179
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      149293573..149387543
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018261978.2 → XP_018117467.1  hippocalcin-like protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q6DCM9
      UniProtKB/TrEMBL
      A0A974HK63
      Conserved Domains (1) summary
      COG5126
      Location:13 → 179
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6DCM9.1 GenPept UniProtKB/Swiss-Prot:Q6DCM9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.