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    cnot3.S CCR4-NOT transcription complex subunit 3 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 446827, updated on 7-Sep-2023

    Summary

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    Official Symbol
    cnot3.S
    Official Full Name
    CCR4-NOT transcription complex subunit 3 S homeolog
    Primary source
    Xenbase:XB-GENE-6087066
    Locus tag
    XELAEV_18037697mg
    See related
    EnsemblRapid:ENSXLAG00005012808
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    not3; cnot3; leng2; not3h
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    Genomic context

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    Location:
    chromosome: 7S
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7S NC_054384.1 (92229099..92275170)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7S NC_030737.1 (73081470..73127643)

    Chromosome 7S - NC_054384.1Genomic Context describing neighboring genes Neighboring gene TCF3 fusion partner Neighboring gene pre-mRNA processing factor 31 S homeolog Neighboring gene ribosomal protein L18 S homeolog Neighboring gene sphingosine kinase 2 S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC80612

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within nuclear-transcribed mRNA poly(A) tail shortening IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of stem cell population maintenance IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of CCR4-NOT core complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    CCR4-NOT transcription complex subunit 3 S homeolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001093523.1 → NP_001086992.1  CCR4-NOT transcription complex subunit 3 S homeolog

      See identical proteins and their annotated locations for NP_001086992.1

      Status: PROVISIONAL

      Source sequence(s)
      BC077869
      UniProtKB/TrEMBL
      Q6DCW9
      Related
      ENSXLAP00005037814.1, ENSXLAT00005038725.1
      Conserved Domains (3) summary
      COG5665
      Location:12 → 726
      COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
      pfam04065
      Location:3 → 227
      Not3; Not1 N-terminal domain, CCR4-Not complex component
      pfam04153
      Location:599 → 720
      NOT2_3_5; NOT2 / NOT3 / NOT5 family

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      92229099..92275170
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041570509.1 → XP_041426443.1  CCR4-NOT transcription complex subunit 3 S homeolog isoform X9

      UniProtKB/TrEMBL
      A0A8J1LA82
      Related
      ENSXLAP00005037853.1, ENSXLAT00005038764.1
      Conserved Domains (2) summary
      COG5665
      Location:2 → 700
      COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
      pfam04065
      Location:2 → 197
      Not3; Not1 N-terminal domain, CCR4-Not complex component

    2. XM_018226963.2 → XP_018082452.1  CCR4-NOT transcription complex subunit 3 S homeolog isoform X5

      UniProtKB/TrEMBL
      A0A8J0TEF1

    3. XM_018226961.2 → XP_018082450.1  CCR4-NOT transcription complex subunit 3 S homeolog isoform X3

      UniProtKB/TrEMBL
      A0A8J0TD18

    4. XM_018226964.2 → XP_018082453.1  CCR4-NOT transcription complex subunit 3 S homeolog isoform X6

      UniProtKB/TrEMBL
      A0A8J0TB16

    5. XM_018226960.2 → XP_018082449.1  CCR4-NOT transcription complex subunit 3 S homeolog isoform X2

      UniProtKB/TrEMBL
      A0A1L8FGR1, A0A974HAE6

    6. XM_018226965.2 → XP_018082454.1  CCR4-NOT transcription complex subunit 3 S homeolog isoform X7

      UniProtKB/TrEMBL
      A0A8J0T4X2

    7. XM_018226962.2 → XP_018082451.1  CCR4-NOT transcription complex subunit 3 S homeolog isoform X4

      UniProtKB/TrEMBL
      A0A8J0TDR5

    8. XM_018226966.2 → XP_018082455.1  CCR4-NOT transcription complex subunit 3 S homeolog isoform X8

      UniProtKB/TrEMBL
      A0A8J0TD24

    9. XM_018226956.2 → XP_018082445.1  CCR4-NOT transcription complex subunit 3 S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J0TD14
      Conserved Domains (2) summary
      COG5665
      Location:12 → 730
      COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
      pfam04065
      Location:3 → 227
      Not3; Not1 N-terminal domain, CCR4-Not complex component

    10. XM_018226958.2 → XP_018082447.1  CCR4-NOT transcription complex subunit 3 S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J0TD14
      Conserved Domains (2) summary
      COG5665
      Location:12 → 730
      COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
      pfam04065
      Location:3 → 227
      Not3; Not1 N-terminal domain, CCR4-Not complex component

    11. XM_018226954.2 → XP_018082443.1  CCR4-NOT transcription complex subunit 3 S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J0TD14
      Conserved Domains (2) summary
      COG5665
      Location:12 → 730
      COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
      pfam04065
      Location:3 → 227
      Not3; Not1 N-terminal domain, CCR4-Not complex component

    12. XM_018226957.2 → XP_018082446.1  CCR4-NOT transcription complex subunit 3 S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J0TD14
      Conserved Domains (2) summary
      COG5665
      Location:12 → 730
      COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
      pfam04065
      Location:3 → 227
      Not3; Not1 N-terminal domain, CCR4-Not complex component

    13. XM_018226955.2 → XP_018082444.1  CCR4-NOT transcription complex subunit 3 S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J0TD14
      Conserved Domains (2) summary
      COG5665
      Location:12 → 730
      COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
      pfam04065
      Location:3 → 227
      Not3; Not1 N-terminal domain, CCR4-Not complex component

    14. XM_018226959.2 → XP_018082448.1  CCR4-NOT transcription complex subunit 3 S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J0TD14
      Conserved Domains (2) summary
      COG5665
      Location:12 → 730
      COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
      pfam04065
      Location:3 → 227
      Not3; Not1 N-terminal domain, CCR4-Not complex component

    15. XM_041570507.1 → XP_041426441.1  CCR4-NOT transcription complex subunit 3 S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J0TD14
      Related
      ENSXLAP00005037838.1, ENSXLAT00005038749.1
      Conserved Domains (2) summary
      COG5665
      Location:12 → 730
      COG5665; CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
      pfam04065
      Location:3 → 227
      Not3; Not1 N-terminal domain, CCR4-Not complex component
    Nucleotide Protein Strain
    Heading Accession and Version

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