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    ccdc85cb coiled-coil domain containing 85C, b [ Danio rerio (zebrafish) ]

    Gene ID: 436901, updated on 27-Mar-2024

    Summary

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    Official Symbol
    ccdc85cbprovided by ZNC
    Official Full Name
    coiled-coil domain containing 85C, bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040718-373
    See related
    Ensembl:ENSDARG00000079555 AllianceGenome:ZFIN:ZDB-GENE-040718-373
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:92236; im:7148435
    Summary
    Predicted to be located in adherens junction and bicellular tight junction. Predicted to be active in apical junction complex. Is expressed in diencephalon; midbrain; otic vesicle; pronephric duct; and retinal ganglion cell layer. Orthologous to human CCDC85C (coiled-coil domain containing 85C). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: 20
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (5158414..5229352, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (5113817..5184923, complement)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 46, subfamily A, polypeptide 1, tandem duplicate 1 Neighboring gene cytochrome P450, family 46, subfamily A, polypeptide 1, tandem duplicate 5 Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene cytochrome P450, family 46, subfamily A, polypeptide 1, tandem duplicate 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in anchoring junction IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in apical junction complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in bicellular tight junction IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 85C-B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001002628.1 → NP_001002628.1  coiled-coil domain-containing protein 85C-B

      See identical proteins and their annotated locations for NP_001002628.1

      Status: PROVISIONAL

      Source sequence(s)
      BC075952
      UniProtKB/Swiss-Prot
      Q6DHL7
      Related
      ENSDARP00000153712.1, ENSDART00000182876.1
      Conserved Domains (1) summary
      pfam10226
      Location:7 → 178
      DUF2216; Uncharacterized conserved proteins (DUF2216)

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      5158414..5229352 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005160350.4 → XP_005160407.1  coiled-coil domain-containing protein 85C-B isoform X1

      UniProtKB/TrEMBL
      A0A8M2B759
      Conserved Domains (1) summary
      pfam10226
      Location:8 → 179
      DUF2216; Uncharacterized conserved proteins (DUF2216)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6DHL7.1 GenPept UniProtKB/Swiss-Prot:Q6DHL7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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