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    LOC4325911 tubby-like F-box protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325911, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LOC4325911
    Gene description
    tubby-like F-box protein 1
    Locus tag
    OSNPB_010674500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    TULP1; TULP9; OsTLP1; OsTLP9; OJ1117_G01.2-1; OJ1117_G01.2-2
    Expression
    Ubiquitous expression in roots before flowering (RPKM 49.1), leaves before flowering (RPKM 36.8) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (27716196..27721212, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9272505 Neighboring gene uncharacterized LOC9272063 Neighboring gene pentatricopeptide repeat-containing protein At1g30610, chloroplastic Neighboring gene protein MALE DISCOVERER 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    tubby-like F-box protein 1
    Names
    Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein-like
    LOC_Os01g48370
    P0485G01.36-1
    P0485G01.36-2
    TUBBY protein
    Tubby-like F-box protein 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401531.1 → NP_001388460.1  tubby-like F-box protein 1

      Status: VALIDATED

      Source sequence(s)
      CI607545, EU847002
      UniProtKB/Swiss-Prot
      Q5QM27
      UniProtKB/TrEMBL
      A2WTP7, B7EHT3

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      27716196..27721212 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766303.1 → XP_015621789.1  tubby-like F-box protein 1

      UniProtKB/Swiss-Prot
      Q5QM27
      UniProtKB/TrEMBL
      B7EHT3
      Conserved Domains (2) summary
      pfam01167
      Location:98 → 351
      Tub; Tub family
      pfam12937
      Location:34 → 77
      F-box-like
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5QM27.1 GenPept UniProtKB/Swiss-Prot:Q5QM27

    Gene LinkOut

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