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    SGMS2 sphingomyelin synthase 2 [ Gallus gallus (chicken) ]

    Gene ID: 422529, updated on 5-Mar-2024

    Summary

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    Symbol
    SGMS2provided by CGNC
    Full Name
    sphingomyelin synthase 2provided by CGNC
    Primary source
    CGNC:51770
    See related
    Ensembl:ENSGALG00010005670
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (37546810..37584696, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (37500085..37537953, complement)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene hydroxyacyl-CoA dehydrogenase Neighboring gene cytochrome P450 family 2 subfamily U member 1 Neighboring gene uncharacterized LOC121110730 Neighboring gene uncharacterized LOC121110731 Neighboring gene 3'-phosphoadenosine 5'-phosphosulfate synthase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ceramide cholinephosphotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sphingomyelin synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ceramide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sphingomyelin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphatidylcholine:ceramide cholinephosphotransferase 2
    NP_001264755.1
    XP_015131692.1
    XP_040554859.1
    XP_040554860.1
    XP_040554861.1
    XP_040554862.1
    XP_046771928.1
    XP_046771929.1
    XP_046771930.1
    XP_046771931.1
    XP_046771932.1
    XP_046771933.1
    XP_046771934.1
    XP_046796038.1
    XP_046796039.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001277826.2 → NP_001264755.1  phosphatidylcholine:ceramide cholinephosphotransferase 2

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000073
      UniProtKB/TrEMBL
      F1NLG9
      Related
      ENSGALP00010008036.1, ENSGALT00010013547.1
      Conserved Domains (1) summary
      pfam14360
      Location:220 → 293
      PAP2_C; PAP2 superfamily C-terminal

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      37546810..37584696 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015276206.4 → XP_015131692.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

      UniProtKB/TrEMBL
      F1NLG9
      Conserved Domains (1) summary
      pfam14360
      Location:220 → 293
      PAP2_C; PAP2 superfamily C-terminal

    2. XM_040698927.2 → XP_040554861.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

      UniProtKB/TrEMBL
      F1NLG9
      Conserved Domains (1) summary
      pfam14360
      Location:220 → 293
      PAP2_C; PAP2 superfamily C-terminal

    3. XM_040698926.2 → XP_040554860.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

      UniProtKB/TrEMBL
      F1NLG9
      Conserved Domains (1) summary
      pfam14360
      Location:220 → 293
      PAP2_C; PAP2 superfamily C-terminal

    4. XM_040698928.2 → XP_040554862.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

      UniProtKB/TrEMBL
      F1NLG9
      Conserved Domains (1) summary
      pfam14360
      Location:220 → 293
      PAP2_C; PAP2 superfamily C-terminal

    5. XM_046940083.1 → XP_046796039.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

      UniProtKB/TrEMBL
      F1NLG9

    6. XM_040698925.2 → XP_040554859.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

      UniProtKB/TrEMBL
      F1NLG9
      Conserved Domains (1) summary
      pfam14360
      Location:220 → 293
      PAP2_C; PAP2 superfamily C-terminal

    7. XM_046940082.1 → XP_046796038.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

      UniProtKB/TrEMBL
      F1NLG9

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      37500085..37537953 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046915972.1 → XP_046771928.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

      UniProtKB/TrEMBL
      F1NLG9

    2. XM_046915974.1 → XP_046771930.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

      UniProtKB/TrEMBL
      F1NLG9

    3. XM_046915975.1 → XP_046771931.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

      UniProtKB/TrEMBL
      F1NLG9

    4. XM_046915976.1 → XP_046771932.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

      UniProtKB/TrEMBL
      F1NLG9

    5. XM_046915978.1 → XP_046771934.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

      UniProtKB/TrEMBL
      F1NLG9

    6. XM_046915973.1 → XP_046771929.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

      UniProtKB/TrEMBL
      F1NLG9

    7. XM_046915977.1 → XP_046771933.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

      UniProtKB/TrEMBL
      F1NLG9
    Nucleotide Protein Strain
    Heading Accession and Version

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