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    SLITRK4 SLIT and NTRK like family member 4 [ Gallus gallus (chicken) ]

    Gene ID: 422287, updated on 5-Mar-2024

    Summary

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    Symbol
    SLITRK4provided by CGNC
    Full Name
    SLIT and NTRK like family member 4provided by CGNC
    Primary source
    CGNC:5472
    See related
    Ensembl:ENSGALG00010019325
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (9857175..9866616)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (9891186..9900629)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene TNF-related apoptosis inducing ligand-like Neighboring gene uncharacterized LOC107052067 Neighboring gene uncharacterized LOC121110603 Neighboring gene uncharacterized LOC112532332

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axonogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of synapse assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of presynapse assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in glutamatergic synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SLIT and NTRK-like protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      9857175..9866616
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004940727.5 → XP_004940784.1  SLIT and NTRK-like protein 4 isoform X3

      See identical proteins and their annotated locations for XP_004940784.1

      UniProtKB/TrEMBL
      A0A8V0ZAZ0
      Conserved Domains (5) summary
      smart00082
      Location:213 → 253
      LRRCT; Leucine rich repeat C-terminal domain
      sd00033
      Location:63 → 84
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:402 → 461
      LRR_8; Leucine rich repeat
      cd21340
      Location:359 → 532
      PPP1R42; protein phosphatase 1 regulatory subunit 42
      cl15307
      Location:531 → 563
      TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

    2. XM_004940726.5 → XP_004940783.1  SLIT and NTRK-like protein 4 isoform X3

      See identical proteins and their annotated locations for XP_004940783.1

      UniProtKB/TrEMBL
      A0A8V0ZAZ0
      Related
      ENSGALP00010027833.1, ENSGALT00010046742.1
      Conserved Domains (5) summary
      smart00082
      Location:213 → 253
      LRRCT; Leucine rich repeat C-terminal domain
      sd00033
      Location:63 → 84
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:402 → 461
      LRR_8; Leucine rich repeat
      cd21340
      Location:359 → 532
      PPP1R42; protein phosphatase 1 regulatory subunit 42
      cl15307
      Location:531 → 563
      TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

    3. XM_046940610.1 → XP_046796566.1  SLIT and NTRK-like protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZAZ0

    4. XM_004940725.5 → XP_004940782.2  SLIT and NTRK-like protein 4 isoform X1

      Conserved Domains (5) summary
      smart00082
      Location:299 → 339
      LRRCT; Leucine rich repeat C-terminal domain
      sd00033
      Location:149 → 170
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:488 → 547
      LRR_8; Leucine rich repeat
      cd21340
      Location:445 → 618
      PPP1R42; protein phosphatase 1 regulatory subunit 42
      cl15307
      Location:617 → 649
      TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

    5. XM_046940608.1 → XP_046796564.1  SLIT and NTRK-like protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZAZ0
      Related
      ENSGALP00010027829.1, ENSGALT00010046734.1

    6. XM_046940609.1 → XP_046796565.1  SLIT and NTRK-like protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZAZ0

    7. XM_015278534.4 → XP_015134020.1  SLIT and NTRK-like protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZAZ0
      Related
      ENSGALP00010027831.1, ENSGALT00010046739.1
      Conserved Domains (5) summary
      smart00082
      Location:213 → 253
      LRRCT; Leucine rich repeat C-terminal domain
      sd00033
      Location:63 → 84
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:402 → 461
      LRR_8; Leucine rich repeat
      cd21340
      Location:359 → 532
      PPP1R42; protein phosphatase 1 regulatory subunit 42
      cl15307
      Location:531 → 563
      TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

    8. XM_046940605.1 → XP_046796561.1  SLIT and NTRK-like protein 4 isoform X2

    9. XM_046940606.1 → XP_046796562.1  SLIT and NTRK-like protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZAZ0

    10. XM_046940607.1 → XP_046796563.1  SLIT and NTRK-like protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZAZ0

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      9891186..9900629
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040670273.2 → XP_040526207.1  SLIT and NTRK-like protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZAZ0
      Conserved Domains (5) summary
      smart00082
      Location:213 → 253
      LRRCT; Leucine rich repeat C-terminal domain
      sd00033
      Location:63 → 84
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:402 → 461
      LRR_8; Leucine rich repeat
      cd21340
      Location:359 → 532
      PPP1R42; protein phosphatase 1 regulatory subunit 42
      cl15307
      Location:531 → 563
      TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

    2. XM_040670274.2 → XP_040526208.1  SLIT and NTRK-like protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZAZ0
      Conserved Domains (5) summary
      smart00082
      Location:213 → 253
      LRRCT; Leucine rich repeat C-terminal domain
      sd00033
      Location:63 → 84
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:402 → 461
      LRR_8; Leucine rich repeat
      cd21340
      Location:359 → 532
      PPP1R42; protein phosphatase 1 regulatory subunit 42
      cl15307
      Location:531 → 563
      TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

    3. XM_046916890.1 → XP_046772846.1  SLIT and NTRK-like protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZAZ0

    4. XM_040670271.2 → XP_040526205.1  SLIT and NTRK-like protein 4 isoform X1

      Conserved Domains (5) summary
      smart00082
      Location:299 → 339
      LRRCT; Leucine rich repeat C-terminal domain
      sd00033
      Location:149 → 170
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:488 → 547
      LRR_8; Leucine rich repeat
      cd21340
      Location:445 → 618
      PPP1R42; protein phosphatase 1 regulatory subunit 42
      cl15307
      Location:617 → 649
      TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

    5. XM_046916888.1 → XP_046772844.1  SLIT and NTRK-like protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZAZ0

    6. XM_046916889.1 → XP_046772845.1  SLIT and NTRK-like protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZAZ0

    7. XM_040670272.2 → XP_040526206.1  SLIT and NTRK-like protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZAZ0
      Conserved Domains (5) summary
      smart00082
      Location:213 → 253
      LRRCT; Leucine rich repeat C-terminal domain
      sd00033
      Location:63 → 84
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:402 → 461
      LRR_8; Leucine rich repeat
      cd21340
      Location:359 → 532
      PPP1R42; protein phosphatase 1 regulatory subunit 42
      cl15307
      Location:531 → 563
      TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

    8. XM_046916885.1 → XP_046772841.1  SLIT and NTRK-like protein 4 isoform X2

    9. XM_046916886.1 → XP_046772842.1  SLIT and NTRK-like protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZAZ0

    10. XM_046916887.1 → XP_046772843.1  SLIT and NTRK-like protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZAZ0
    Nucleotide Protein
    Heading Accession and Version

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