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    zc3h7a zinc finger CCCH-type containing 7A [ Danio rerio (zebrafish) ]

    Gene ID: 406743, updated on 27-Mar-2024

    Summary

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    Official Symbol
    zc3h7aprovided by ZNC
    Official Full Name
    zinc finger CCCH-type containing 7Aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2776
    See related
    Ensembl:ENSDARG00000102195 AllianceGenome:ZFIN:ZDB-GENE-040426-2776
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zc3h7; fa12e01; fc07f05; fc38e12; fc55c11; zgc:55684; wu:fa12e01; wu:fc07f05; wu:fc38e12; wu:fc55c11
    Summary
    Predicted to enable miRNA binding activity. Predicted to be involved in production of miRNAs involved in gene silencing by miRNA. Orthologous to human ZC3H7A (zinc finger CCCH-type containing 7A). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (43774369..43808322)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (43073452..43107405)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene si:ch73-156l6.2 Neighboring gene microRNA 365-1 Neighboring gene phospholipase A2 group X Neighboring gene stannin Neighboring gene lipopolysaccharide-induced TNF factor Neighboring gene RecQ mediated genome instability 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables miRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables miRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in miRNA processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger CCCH domain-containing protein 7A
    Names
    zinc finger CCCH-type containing 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213434.1 → NP_998599.1  zinc finger CCCH domain-containing protein 7A

      See identical proteins and their annotated locations for NP_998599.1

      Status: PROVISIONAL

      Source sequence(s)
      BC048884
      UniProtKB/TrEMBL
      Q7ZUL0
      Related
      ENSDARP00000141738.1, ENSDART00000157964.2
      Conserved Domains (7) summary
      sd00020
      Location:871 → 893
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00006
      Location:46 → 71
      TPR; TPR repeat [structural motif]
      pfam00515
      Location:90 → 122
      TPR_1; Tetratricopeptide repeat
      pfam12171
      Location:871 → 894
      zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
      pfam13414
      Location:44 → 120
      TPR_11; TPR repeat
      pfam13431
      Location:112 → 142
      TPR_17; Tetratricopeptide repeat
      pfam14559
      Location:105 → 166
      TPR_19; Tetratricopeptide repeat

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      43774369..43808322
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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