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    SLC25A11 solute carrier family 25 member 11 [ Sus scrofa (pig) ]

    Gene ID: 397390, updated on 5-Mar-2024

    Summary

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    Official Symbol
    SLC25A11provided by VGNC
    Official Full Name
    solute carrier family 25 member 11provided by VGNC
    Primary source
    VGNC:VGNC:92991
    See related
    Ensembl:ENSSSCG00000032472
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    OMC
    Expression
    Broad expression in psoas major muscle (RPKM 141.0), heart (RPKM 119.3) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (51970794..51973668)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (54039520..54042613)

    Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene enolase 3 Neighboring gene profilin 1 Neighboring gene ring finger protein 167 Neighboring gene glycoprotein Ib platelet subunit alpha Neighboring gene uncharacterized LOC110255314

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Ontogeny of malate-aspartate shuttle capacity and gene expression in cardiac mitochondria. Scholz TD, et al. Am J Physiol, 1998 Mar. PMID 9530110
    2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables malate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxaloacetate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables succinate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sulfate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables thiosulfate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in malate transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitochondrial transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in oxaloacetate transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphate ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in succinate transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sulfate transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in thiosulfate transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mitochondrial 2-oxoglutarate/malate carrier protein
    Names
    Mitochondrial 2-oxoglutarate/malate carrier protein
    oxoglutarate/malate carrier-like
    putative oxoglutarate/malate carrier

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

      Range
      51970794..51973668
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021067766.1 → XP_020923425.1  mitochondrial 2-oxoglutarate/malate carrier protein isoform X1

      UniProtKB/TrEMBL
      A0A0B8RT73, A0A287AN76, A0A4X1UXU0, A0A8D0Y8P6
      Related
      ENSSSCP00000045513.1, ENSSSCT00000050659.2
      Conserved Domains (1) summary
      pfam00153
      Location:116 → 213
      Mito_carr; Mitochondrial carrier protein

    2. XM_021067767.1 → XP_020923426.1  mitochondrial 2-oxoglutarate/malate carrier protein isoform X2

      UniProtKB/TrEMBL
      A0A8D1HDS8
      Conserved Domains (1) summary
      pfam00153
      Location:113 → 210
      Mito_carr; Mitochondrial carrier protein
    Nucleotide Protein Strain
    Heading Accession and Version

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