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    SYP synaptophysin [ Gallus gallus (chicken) ]

    Gene ID: 396359, updated on 3-Apr-2024

    Summary

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    Symbol
    SYPprovided by CGNC
    Full Name
    synaptophysinprovided by CGNC
    Primary source
    CGNC:49768
    See related
    Ensembl:ENSGALG00010021113
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    SYNPR
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 12 NC_052543.1 (13595280..13674915)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 12 NC_052584.1 (13628686..13708705)

    Chromosome 12 - NC_052543.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121106597 Neighboring gene calcium dependent secretion activator Neighboring gene uncharacterized LOC112533365 Neighboring gene sentan, cilia apical structure protein Neighboring gene THO complex 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of an alternatively spliced avian member of the synaptophysin gene family. Bixby JL. Brain Res Mol Brain Res, 1992 May. PMID 1320722

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in synaptic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    synaptoporin
    Names
    synaptophysin IIa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_205394.2 → NP_990725.1  synaptoporin precursor

      See identical proteins and their annotated locations for NP_990725.1

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000252
      UniProtKB/TrEMBL
      A0A8V0ZAK5, Q90661
      Related
      ENSGALP00010030330.1, ENSGALT00010051139.1
      Conserved Domains (1) summary
      pfam01284
      Location:68 → 196
      MARVEL; Membrane-associating domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      13595280..13674915
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015293015.3 → XP_015148501.2  synaptoporin isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZHP4
      Related
      ENSGALP00010030329.1, ENSGALT00010051138.1

    2. XM_015293016.4 → XP_015148502.1  synaptoporin isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZAK5
      Conserved Domains (1) summary
      pfam01284
      Location:61 → 189
      MARVEL; Membrane-associating domain

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      13628686..13708705
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046926133.1 → XP_046782089.1  synaptoporin isoform X3

    2. XM_046926134.1 → XP_046782090.1  synaptoporin isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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