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    tubb.L tubulin beta class I L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 380418, updated on 11-Apr-2024

    Summary

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    Official Symbol
    tubb.L
    Official Full Name
    tubulin beta class I L homeolog
    Primary source
    Xenbase:XB-GENE-864839
    Locus tag
    XELAEV_18039222mg
    See related
    EnsemblRapid:ENSXLAG00005027674
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    XLOT; tubb; tubb5
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    Location:
    chromosome: 8L
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (66849154..66855437, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (53378749..53385032, complement)

    Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene coiled-coil alpha-helical rod protein 1 L homeolog Neighboring gene mediator of DNA damage checkpoint 1 L homeolog Neighboring gene flotillin 1 L homeolog Neighboring gene RING finger protein 39-like L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chfr interacts and colocalizes with TCTP to the mitotic spindle. Burgess A, et al. Oncogene, 2008 Sep 18. PMID 18504434
    2. Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation. Nishiyama A, et al. Nat Commun, 2020 Mar 6. PMID 32144273, Free PMC Article
    3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Clone Names

    • MGC53125

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within microtubule cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within microtubule-based process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in microtubule IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    tubulin beta chain
    Names
    beta5-tubulin
    tubb beta-5
    tubulin beta-1
    tubulin beta-5 chain
    tubulin, beta 5
    tubulin, beta class I

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001087257.1 → NP_001080726.1  tubulin beta chain

      See identical proteins and their annotated locations for NP_001080726.1

      Status: PROVISIONAL

      Source sequence(s)
      BC049004
      UniProtKB/Swiss-Prot
      Q91575
      UniProtKB/TrEMBL
      A0A974C423, A0A974H7Y3
      Related
      ENSXLAP00005082334.1, ENSXLAT00005083966.1
      Conserved Domains (1) summary
      PLN00220
      Location:1 → 429
      PLN00220; tubulin beta chain; Provisional

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      66849154..66855437 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q91575.1 GenPept UniProtKB/Swiss-Prot:Q91575

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.