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    ccn3.L cellular communication network factor 3 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 373662, updated on 11-Apr-2024

    Summary

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    Official Symbol
    ccn3.L
    Official Full Name
    cellular communication network factor 3 L homeolog
    Primary source
    Xenbase:XB-GENE-1013047
    Locus tag
    XELAEV_18032324mg
    See related
    EnsemblRapid:ENSXLAG00005006533
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    nov; ccn3; xnov; nov-A; nov.L
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    Genomic context

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    See ccn3.L in Genome Data Viewer
    Location:
    chromosome: 6L
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (148945804..148952245)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (139773849..139780290)

    Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel, subfamily V, member 4 like, gene 1 L homeolog Neighboring gene transient receptor potential cation channel, subfamily V, member 4 like, gene 2 L homeolog Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 2 L homeolog Neighboring gene TATA-box binding protein associated factor 2 L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and characterization of xnov, a Xenopus laevis ortholog of the chicken nov gene. Ying Z, et al. Gene, 1996 Jun 1. PMID 8666280
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables growth factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables heparin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables integrin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in gap junction IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    CCN family member 3
    Names
    nephroblastoma overexpressed L homeolog
    protein NOV homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001085658.1 → NP_001079127.1  CCN family member 3 precursor

      See identical proteins and their annotated locations for NP_001079127.1

      Status: PROVISIONAL

      Source sequence(s)
      U37063
      UniProtKB/Swiss-Prot
      P51609
      UniProtKB/TrEMBL
      A0A974CQ01, B7ZSG2, Q6INN3
      Related
      ENSXLAP00005019418.1, ENSXLAT00005019753.1
      Conserved Domains (3) summary
      smart00121
      Location:21 → 88
      IB; Insulin growth factor-binding protein homologues
      smart00041
      Location:254 → 323
      CT; C-terminal cystine knot-like domain (CTCK)
      smart00214
      Location:95 → 155
      VWC; von Willebrand factor (vWF) type C domain

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      148945804..148952245
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P51609.1 GenPept UniProtKB/Swiss-Prot:P51609

    Gene LinkOut

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