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    Zmym6 zinc finger MYM-type containing 6 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362602, updated on 13-Apr-2024

    Summary

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    Official Symbol
    Zmym6provided by RGD
    Official Full Name
    zinc finger MYM-type containing 6provided by RGD
    Primary source
    RGD:1561833
    See related
    Ensembl:ENSRNOG00000013865 AllianceGenome:RGD:1561833
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1561833
    Summary
    Predicted to enable zinc ion binding activity. Predicted to be involved in cytoskeleton organization and regulation of cell morphogenesis. Orthologous to human ZMYM6 (zinc finger MYM-type containing 6). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Kidney (RPKM 68.1), Brain (RPKM 62.7) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zmym6 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (144680819..144728805)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (139396374..139444357)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (145138667..145186285)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene CDC42 small effector 1, pseudogene 1 Neighboring gene transfer RNA proline (anticodon AGG) 22 Neighboring gene zinc finger MYM-type containing 1 Neighboring gene uncharacterized LOC134486994 Neighboring gene transmembrane protein 35B Neighboring gene DLG associated protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of a set of conserved and new regulators of cytoskeletal organization, cell morphology and migration. Bai SW, et al. BMC Biol, 2011 Aug 11. PMID 21834987, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cytoskeleton organization ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in regulation of cell morphogenesis ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger MYM-type protein 6
    Names
    zinc finger, MYM-type 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108681.2 → NP_001102151.1  zinc finger MYM-type protein 6

      See identical proteins and their annotated locations for NP_001102151.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A0A0G2K8U2, A6ISC5, D4AEF5
      Related
      ENSRNOP00000019135.3, ENSRNOT00000019135.5
      Conserved Domains (1) summary
      pfam06467
      Location:118 → 159
      zf-FCS; MYM-type Zinc finger with FCS sequence motif

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      144680819..144728805
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063288022.1 → XP_063144092.1  zinc finger MYM-type protein 6 isoform X1

      UniProtKB/TrEMBL
      A6ISC5, D4AEF5

    2. XM_039110350.2 → XP_038966278.1  zinc finger MYM-type protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A0G2K8U2, A6ISC5, D4AEF5
      Conserved Domains (1) summary
      pfam06467
      Location:118 → 159
      zf-FCS; MYM-type Zinc finger with FCS sequence motif

    3. XM_017593509.3 → XP_017448998.1  zinc finger MYM-type protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A0G2K8U2, A6ISC5, D4AEF5
      Conserved Domains (1) summary
      pfam06467
      Location:118 → 159
      zf-FCS; MYM-type Zinc finger with FCS sequence motif

    4. XM_039110355.2 → XP_038966283.1  zinc finger MYM-type protein 6 isoform X3

      Conserved Domains (1) summary
      pfam06467
      Location:118 → 159
      zf-FCS; MYM-type Zinc finger with FCS sequence motif

    5. XM_039110354.2 → XP_038966282.1  zinc finger MYM-type protein 6 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

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