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    Cited1 Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1 [ Mus musculus (house mouse) ]

    Gene ID: 12705, updated on 5-Mar-2024

    Summary

    Official Symbol
    Cited1provided by MGI
    Official Full Name
    Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1provided by MGI
    Primary source
    MGI:MGI:108023
    See related
    Ensembl:ENSMUSG00000051159 AllianceGenome:MGI:108023
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Msg1
    Summary
    Enables chromatin binding activity. Involved in several processes, including negative regulation of osteoblast differentiation; positive regulation of macromolecule metabolic process; and response to interferon-gamma. Acts upstream of or within several processes, including embryonic placenta development; melanocyte differentiation; and vasculogenesis. Located in cytosol and nucleus. Is expressed in several structures, including brain; early conceptus; embryo mesenchyme; genitourinary system; and heart. Orthologous to human CITED1 (Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in placenta adult (RPKM 119.3), mammary gland adult (RPKM 29.1) and 6 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Cited1 in Genome Data Viewer
    Location:
    X D; X 45.25 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (101290984..101295787, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (102247378..102252181, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene ribosomal protein S4, X-linked Neighboring gene predicted gene 14859 Neighboring gene predicted gene 14858 Neighboring gene STARR-seq mESC enhancer starr_47671 Neighboring gene histone deacetylase 8 Neighboring gene predicted gene, 32262 Neighboring gene STARR-seq mESC enhancer starr_47673

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables LBD domain binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables chromatin binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables co-SMAD binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein homodimerization activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables transcription coactivator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables transcription coactivator activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in SMAD protein signal transduction ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within apoptotic process IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in brain development IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    NOT involved_in branching involved in ureteric bud morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in embryonic axis specification ISO
    Inferred from Sequence Orthology
    more info
     
    NOT involved_in kidney development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within labyrinthine layer development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in melanin biosynthetic process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in melanocyte differentiation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in melanocyte differentiation IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    NOT involved_in morphogenesis of an epithelium IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of DNA-templated transcription ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of neuron apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of osteoblast differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in nucleocytoplasmic transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in pigmentation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in pigmentation IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in placenta development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of DNA-templated transcription ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of gene expression IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to cAMP IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in response to cytokine IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in response to estrogen ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to insulin IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in response to interleukin-1 IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in response to interleukin-11 IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in response to interleukin-2 IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in response to interleukin-4 IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in response to interleukin-6 IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in response to interleukin-9 IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in response to lipopolysaccharide IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in response to parathyroid hormone IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in response to transforming growth factor beta ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in response to type II interferon IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within spongiotrophoblast layer development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in transforming growth factor beta receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within vasculogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    cbp/p300-interacting transactivator 1
    Names
    melanocyte-specific protein 1
    NP_001263395.1
    NP_001263402.1
    NP_001263403.1
    NP_031735.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001276466.1NP_001263395.1  cbp/p300-interacting transactivator 1 isoform a

      See identical proteins and their annotated locations for NP_001263395.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1, 2 and 3 encode the same isoform (a).
      Source sequence(s)
      AK148042, AL954850
      Consensus CDS
      CCDS30322.1
      UniProtKB/Swiss-Prot
      P97769
      UniProtKB/TrEMBL
      Q3UGA1
      Related
      ENSMUSP00000051789.4, ENSMUST00000050551.10
      Conserved Domains (1) summary
      pfam04487
      Location:89199
      CITED; CITED
    2. NM_001276473.1NP_001263402.1  cbp/p300-interacting transactivator 1 isoform a

      See identical proteins and their annotated locations for NP_001263402.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR, compared to variant 1. Variants 1, 2 and 3 encode the same isoform (a).
      Source sequence(s)
      AK148042, AL954850
      Consensus CDS
      CCDS30322.1
      UniProtKB/Swiss-Prot
      P97769
      UniProtKB/TrEMBL
      Q3UGA1
      Conserved Domains (1) summary
      pfam04487
      Location:89199
      CITED; CITED
    3. NM_001276474.1NP_001263403.1  cbp/p300-interacting transactivator 1 isoform b

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (b) has a distinct N-terminus and is longer than isoform a.
      Source sequence(s)
      AK148042, AL954850, BC052030, CX237826
      UniProtKB/Swiss-Prot
      P97769
      UniProtKB/TrEMBL
      Q3UGA1
      Conserved Domains (1) summary
      pfam04487
      Location:117227
      CITED
    4. NM_007709.4NP_031735.1  cbp/p300-interacting transactivator 1 isoform a

      See identical proteins and their annotated locations for NP_031735.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2 and 3 encode the same isoform (a).
      Source sequence(s)
      AL954850, BC052030, BQ173936
      Consensus CDS
      CCDS30322.1
      UniProtKB/Swiss-Prot
      P97769
      UniProtKB/TrEMBL
      Q3UGA1
      Related
      ENSMUSP00000098890.4, ENSMUST00000101336.10
      Conserved Domains (1) summary
      pfam04487
      Location:89199
      CITED; CITED

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      101290984..101295787 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)