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    Syp synaptophysin [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100720205, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Syp
    Gene description
    synaptophysin
    See related
    Ensembl:ENSCPOG00000006941
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947486.1 (20473231..20486411, complement)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176287.1 (2428596..2441762, complement)

    NW_026947486.1Genomic Context describing neighboring genes Neighboring gene MAGI family member, X-linked Neighboring gene proteolipid protein 2 Neighboring gene prickle planar cell polarity protein 3 Neighboring gene U6 spliceosomal RNA Neighboring gene calcium voltage-gated channel subunit alpha1 F Neighboring gene coiled-coil domain containing 22 Neighboring gene forkhead box P3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of neuronal synaptic plasticity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in presynaptic active zone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    synaptophysin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947486.1 Reference mCavPor4.1

      Range
      20473231..20486411 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003462592.4 → XP_003462640.2  synaptophysin

      UniProtKB/TrEMBL
      A0A286XE41, H0V8Y9
      Related
      ENSCPOP00000023720.1
      Conserved Domains (2) summary
      pfam02084
      Location:269 → 305
      Bindin; Bindin
      pfam01284
      Location:23 → 222
      MARVEL; Membrane-associating domain
    Nucleotide Protein
    Heading Accession and Version

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