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    LHX9 LIM homeobox 9 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

    Gene ID: 100603988, updated on 8-Mar-2024

    Summary

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    Gene symbol
    LHX9
    Gene description
    LIM homeobox 9
    See related
    EnsemblRapid:ENSNLEG00000018062
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nomascus leucogenys
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
    Orthologs
    human mouse all
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    Genomic context

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    See LHX9 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Asia_NLE_v1 (GCF_006542625.1) 9 NC_044389.1 (18039778..18059420, complement)
    102 previous assembly Nleu_3.0 (GCF_000146795.2) 9 NC_019824.1 (18280692..18305180, complement)

    Chromosome 9 - NC_044389.1Genomic Context describing neighboring genes Neighboring gene ATPase H+ transporting V1 subunit G3 Neighboring gene NIMA related kinase 7 Neighboring gene proline-rich protein 13 pseudogene Neighboring gene chromosome 9 C1orf53 homolog Neighboring gene NANOG neighbor homeobox pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LIM/homeobox protein Lhx9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Asia_NLE_v1 Primary Assembly

    Genomic

    1. NC_044389.1 Reference Asia_NLE_v1 Primary Assembly

      Range
      18039778..18059420 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003264511.3 → XP_003264559.1  LIM/homeobox protein Lhx9 isoform X2

      See identical proteins and their annotated locations for XP_003264559.1

      UniProtKB/TrEMBL
      A0A2I3G0N3
      Related
      ENSNLEP00000021945.4, ENSNLET00000023055.3
      Conserved Domains (3) summary
      cd09377
      Location:129 → 187
      LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
      cd09469
      Location:61 → 124
      LIM1_Lhx2; The first LIM domain of Lhx2
      pfam00046
      Location:271 → 324
      Homeobox; Homeobox domain

    2. XM_030818421.1 → XP_030674281.1  LIM/homeobox protein Lhx9 isoform X3

      Related
      ENSNLEP00000043558.2, ENSNLET00000047418.2
      Conserved Domains (3) summary
      cd09377
      Location:129 → 187
      LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
      cd09469
      Location:61 → 124
      LIM1_Lhx2; The first LIM domain of Lhx2
      smart00389
      Location:267 → 312
      HOX; Homeodomain

    3. XM_012501960.2 → XP_012357414.1  LIM/homeobox protein Lhx9 isoform X1

      UniProtKB/TrEMBL
      A0A2I3G0N3
      Related
      ENSNLEP00000025847.2, ENSNLET00000058239.2
      Conserved Domains (3) summary
      cd09377
      Location:135 → 193
      LIM2_Lhx2_Lhx9; The second LIM domain of Lhx2 and Lhx9 family
      cd09469
      Location:67 → 130
      LIM1_Lhx2; The first LIM domain of Lhx2
      pfam00046
      Location:277 → 330
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version

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