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    NYX nyctalopin [ Nomascus leucogenys (northern white-cheeked gibbon) ]

    Gene ID: 100585745, updated on 8-Mar-2024

    Summary

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    Gene symbol
    NYX
    Gene description
    nyctalopin
    See related
    EnsemblRapid:ENSNLEG00000001945
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nomascus leucogenys
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: X
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103 current Asia_NLE_v1 (GCF_006542625.1) X NC_044406.1 (49978843..50005919, complement)
    102 previous assembly Nleu_3.0 (GCF_000146795.2) X NC_019841.1 (50431694..50458075, complement)

    Chromosome X - NC_044406.1Genomic Context describing neighboring genes Neighboring gene calcium/calmodulin dependent serine protein kinase Neighboring gene 14-3-3 protein zeta/delta pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene gem-associated protein 7-like Neighboring gene protein shisa-5 pseudogene Neighboring gene DEAD-box helicase 3 X-linked

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nyctalopin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Asia_NLE_v1 Primary Assembly

    Genomic

    1. NC_044406.1 Reference Asia_NLE_v1 Primary Assembly

      Range
      49978843..50005919 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003271011.3 → XP_003271059.1  nyctalopin

      UniProtKB/TrEMBL
      A0A2I3G7X5, G1QN13
      Related
      ENSNLEP00000027486.2, ENSNLET00000037971.2
      Conserved Domains (5) summary
      TIGR00864
      Location:285 → 474
      PCC; polycystin cation channel protein
      smart00082
      Location:336 → 370
      LRRCT; Leucine rich repeat C-terminal domain
      sd00031
      Location:328 → 340
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:68 → 87
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:66 → 120
      LRR_8; Leucine rich repeat

    2. XM_030807411.1 → XP_030663271.1  nyctalopin

      UniProtKB/TrEMBL
      A0A2I3G7X5, G1QN13
      Conserved Domains (5) summary
      TIGR00864
      Location:285 → 474
      PCC; polycystin cation channel protein
      smart00082
      Location:336 → 370
      LRRCT; Leucine rich repeat C-terminal domain
      sd00031
      Location:328 → 340
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:68 → 87
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:66 → 120
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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