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    NDST3 N-deacetylase and N-sulfotransferase 3 [ Sus scrofa (pig) ]

    Gene ID: 100525060, updated on 8-Mar-2024

    Summary

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    Official Symbol
    NDST3provided by VGNC
    Official Full Name
    N-deacetylase and N-sulfotransferase 3provided by VGNC
    Primary source
    VGNC:VGNC:90635
    See related
    Ensembl:ENSSSCG00000009115
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in lung (RPKM 1.7), mixtures (RPKM 0.5) and 5 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (105221344..105370067, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (112936356..113071738, complement)

    Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100525935 Neighboring gene osteoclast-stimulating factor 1 pseudogene Neighboring gene ras-related protein Rab-40C pseudogene Neighboring gene translation initiation factor IF-2-like Neighboring gene uncharacterized LOC110262167 Neighboring gene uncharacterized LOC110262168

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables deacetylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3
    Names
    N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

      Range
      105221344..105370067 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021101656.1 → XP_020957315.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3

      UniProtKB/TrEMBL
      A0A4X1V5D4, A0A8D1XPR8, F1S152
      Related
      ENSSSCP00000009724.3, ENSSSCT00000009982.5
      Conserved Domains (2) summary
      pfam00685
      Location:609 → 860
      Sulfotransfer_1; Sulfotransferase domain
      pfam12062
      Location:34 → 520
      HSNSD; heparan sulfate-N-deacetylase

    2. XM_005666900.3 → XP_005666957.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3

      UniProtKB/TrEMBL
      A0A4X1V5D4, A0A8D1XPR8, F1S152
      Conserved Domains (2) summary
      pfam00685
      Location:609 → 860
      Sulfotransfer_1; Sulfotransferase domain
      pfam12062
      Location:34 → 520
      HSNSD; heparan sulfate-N-deacetylase
    Nucleotide Protein
    Heading Accession and Version

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