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    MTMR1 myotubularin related protein 1 [ Sus scrofa (pig) ]

    Gene ID: 100517258, updated on 8-Mar-2024

    Summary

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    Official Symbol
    MTMR1provided by VGNC
    Official Full Name
    myotubularin related protein 1provided by VGNC
    Primary source
    VGNC:VGNC:90456
    See related
    Ensembl:ENSSSCG00000012743
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in spleen (RPKM 10.8), heart (RPKM 8.5) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: X
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) X NC_010461.5 (122394768..122455266)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) X NC_010461.4 (140009688..140070233)

    Chromosome X - NC_010461.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102158739 Neighboring gene myotubularin 1 Neighboring gene CD99 molecule like 2 Neighboring gene uncharacterized LOC110257812 Neighboring gene high mobility group box 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphatidylinositol dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: myotubularin-related protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010461.5 Reference Sscrofa11.1 Primary Assembly

      Range
      122394768..122455266
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013991042.2 → XP_013846496.2  LOW QUALITY PROTEIN: myotubularin-related protein 1

      UniProtKB/TrEMBL
      A0A8D1V330
      Related
      ENSSSCP00000029042.3, ENSSSCT00000035958.3
      Conserved Domains (2) summary
      cd13358
      Location:122 → 221
      PH-GRAM_MTMR1; Myotubularian related 1 protein (MTMR1) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain
      pfam06602
      Location:244 → 564
      Myotub-related; Myotubularin-like phosphatase domain
    Nucleotide Protein
    Heading Accession and Version

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