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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001246202.1 → NP_001233131.1 polycystin-1 precursor
See identical proteins and their annotated locations for NP_001233131.1
Status: PROVISIONAL
- Source sequence(s)
-
FR775982
- UniProtKB/TrEMBL
- A0A8D1FPW1, F4NA29
- Related
- ENSSSCP00000008588.2, ENSSSCT00000008812.3
- Conserved Domains (13) summary
-
- cd00037
Location:418 → 531
- CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
- TIGR00864
Location:97 → 2743
- PCC; polycystin cation channel protein
- smart00303
Location:3023 → 3072
- GPS; G-protein-coupled receptor proteolytic site domain
- smart00013
Location:32 → 71
- LRRNT; Leucine rich repeat N-terminal domain
- smart00082
Location:125 → 177
- LRRCT; Leucine rich repeat C-terminal domain
- smart00089
Location:1032 → 1133
- PKD; Repeats in polycystic kidney disease 1 (PKD1) and other proteins
- COG4886
Location:50 → 128
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- cd01752
Location:3130 → 3249
- PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
- sd00031
Location:70 → 92
- LRR_1; leucine-rich repeat [structural motif]
- pfam00801
Location:1651 → 1720
- PKD; PKD domain
- pfam08016
Location:3718 → 4122
- PKD_channel; Polycystin cation channel
- pfam12799
Location:93 → 128
- LRR_4; Leucine Rich repeats (2 copies)
- cl02568
Location:177 → 268
- WSC; WSC domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference Sscrofa11.1 Primary Assembly
Genomic
-
NC_010445.4 Reference Sscrofa11.1 Primary Assembly
- Range
-
39849579..39899455
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_013987810.2 → XP_013843264.1 polycystin-1 isoform X1
- UniProtKB/TrEMBL
-
F1RFB1
- Conserved Domains (13) summary
-
- cd00037
Location:418 → 531
- CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
- TIGR00864
Location:97 → 2744
- PCC; polycystin cation channel protein
- smart00303
Location:3024 → 3073
- GPS; G-protein-coupled receptor proteolytic site domain
- smart00013
Location:32 → 71
- LRRNT; Leucine rich repeat N-terminal domain
- smart00082
Location:125 → 177
- LRRCT; Leucine rich repeat C-terminal domain
- smart00089
Location:1033 → 1134
- PKD; Repeats in polycystic kidney disease 1 (PKD1) and other proteins
- COG4886
Location:50 → 128
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- cd01752
Location:3131 → 3250
- PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
- sd00031
Location:70 → 92
- LRR_1; leucine-rich repeat [structural motif]
- pfam00801
Location:1652 → 1721
- PKD; PKD domain
- pfam08016
Location:3719 → 4123
- PKD_channel; Polycystin cation channel
- pfam12799
Location:93 → 128
- LRR_4; Leucine Rich repeats (2 copies)
- cl02568
Location:177 → 271
- WSC; WSC domain
-
XM_005655159.3 → XP_005655216.1 polycystin-1 isoform X2
- UniProtKB/TrEMBL
-
F4NA28
- Conserved Domains (13) summary
-
- cd00037
Location:418 → 531
- CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
- TIGR00864
Location:97 → 2732
- PCC; polycystin cation channel protein
- smart00303
Location:3012 → 3061
- GPS; G-protein-coupled receptor proteolytic site domain
- smart00013
Location:32 → 71
- LRRNT; Leucine rich repeat N-terminal domain
- smart00082
Location:125 → 177
- LRRCT; Leucine rich repeat C-terminal domain
- smart00089
Location:1021 → 1122
- PKD; Repeats in polycystic kidney disease 1 (PKD1) and other proteins
- COG4886
Location:50 → 128
- LRR; Leucine-rich repeat (LRR) protein [Transcription]
- cd01752
Location:3119 → 3238
- PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
- sd00031
Location:70 → 92
- LRR_1; leucine-rich repeat [structural motif]
- pfam00801
Location:1640 → 1709
- PKD; PKD domain
- pfam08016
Location:3707 → 4111
- PKD_channel; Polycystin cation channel
- pfam12799
Location:93 → 128
- LRR_4; Leucine Rich repeats (2 copies)
- cl02568
Location:177 → 271
- WSC; WSC domain
-
XM_013987811.2 → XP_013843265.1 polycystin-1 isoform X3
- UniProtKB/TrEMBL
-
F1RFB1
- Conserved Domains (12) summary
-
- cd00037
Location:361 → 474
- CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
- TIGR00864
Location:40 → 2687
- PCC; polycystin cation channel protein
- smart00303
Location:2967 → 3016
- GPS; G-protein-coupled receptor proteolytic site domain
- smart00082
Location:68 → 120
- LRRCT; Leucine rich repeat C-terminal domain
- smart00089
Location:976 → 1077
- PKD; Repeats in polycystic kidney disease 1 (PKD1) and other proteins
- cd01752
Location:3074 → 3193
- PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
- sd00031
Location:36 → 59
- LRR_1; leucine-rich repeat [structural motif]
- pfam00801
Location:1595 → 1664
- PKD; PKD domain
- pfam08016
Location:3662 → 4066
- PKD_channel; Polycystin cation channel
- pfam12799
Location:36 → 71
- LRR_4; Leucine Rich repeats (2 copies)
- pfam13855
Location:10 → 46
- LRR_8; Leucine rich repeat
- cl02568
Location:120 → 214
- WSC; WSC domain
-
XM_021085680.1 → XP_020941339.1 polycystin-1 isoform X4
- UniProtKB/TrEMBL
-
F1RFB1
- Conserved Domains (5) summary
-
- TIGR00864
Location:29 → 2676
- PCC; polycystin cation channel protein
- smart00303
Location:2956 → 3005
- GPS; G-protein-coupled receptor proteolytic site domain
- cd01752
Location:3063 → 3182
- PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
- sd00031
Location:25 → 48
- LRR_1; leucine-rich repeat [structural motif]
- cl27887
Location:3651 → 4055
- PKD_channel; Polycystin cation channel