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    BRSK1 BR serine/threonine kinase 1 [ Sus scrofa (pig) ]

    Gene ID: 100512610, updated on 8-Mar-2024

    Summary

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    Official Symbol
    BRSK1provided by VGNC
    Official Full Name
    BR serine/threonine kinase 1provided by VGNC
    Primary source
    VGNC:VGNC:85888
    See related
    Ensembl:ENSSSCG00000032656
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in mixtures (RPKM 7.9), ovary (RPKM 2.8) and 5 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (59468289..59499062)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (54372199..54377541, complement)

    Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene transmembrane protein 86B Neighboring gene protein phosphatase 6 regulatory subunit 1 Neighboring gene HSPA (Hsp70) binding protein 1 Neighboring gene transmembrane protein 150B Neighboring gene lysine methyltransferase 5C Neighboring gene cytochrome c oxidase subunit 6B2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tau-protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in microtubule cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine-protein kinase BRSK1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

      Range
      59468289..59499062
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021094996.1 → XP_020950655.1  serine/threonine-protein kinase BRSK1 isoform X1

      UniProtKB/TrEMBL
      A0A480UIR3, A0A8D0ZIK0, A0A8D1QJG9
      Related
      ENSSSCP00000048923.3, ENSSSCT00000048975.3
      Conserved Domains (2) summary
      cd14340
      Location:314 → 367
      UBA_BRSK; UBA domain found in serine/threonine-protein kinase BRSK1, BRSK2 and similar proteins
      cd14081
      Location:32 → 285
      STKc_BRSK1_2; Catalytic domain of Brain-specific serine/threonine-protein kinases 1 and 2

    2. XM_021094997.1 → XP_020950656.1  serine/threonine-protein kinase BRSK1 isoform X2

      UniProtKB/TrEMBL
      A0A287AXR1, A0A4X1UJA5
      Conserved Domains (2) summary
      cd14340
      Location:273 → 326
      UBA_BRSK; UBA domain found in serine/threonine-protein kinase BRSK1, BRSK2 and similar proteins
      cd14081
      Location:5 → 244
      STKc_BRSK1_2; Catalytic domain of Brain-specific serine/threonine-protein kinases 1 and 2
    Nucleotide Protein
    Heading Accession and Version

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