U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    otoa otoancorin [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100490578, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    otoaprovided by Xenbase
    Official Full Name
    otoancorinprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-5811283
    See related
    Ensembl:ENSXETG00000024067
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    ct108; dfnb22
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 9
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (25179250..25227189)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (19342125..19383843)

    Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene transmembrane protein 180 Neighboring gene immunoglobulin superfamily member 6 Neighboring gene methyltransferase 9, His-X-His N1(pi)-histidine Neighboring gene KDEL endoplasmic reticulum protein retention receptor 2 Neighboring gene PMS1 homolog 2, mismatch repair system component

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    involved_in cell-matrix adhesion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cell surface IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    otoancorin

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      25179250..25227189
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031893565.1 → XP_031749425.1  otoancorin

      UniProtKB/TrEMBL
      F7CSB2
      Related
      ENSXETP00000051916.5, ENSXETT00000051916.5
      Conserved Domains (1) summary
      pfam06060
      Location:560 → 926
      Mesothelin; Pre-pro-megakaryocyte potentiating factor precursor (Mesothelin)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Miscellaneous