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    SYCP1 synaptonemal complex protein 1 [ Ailuropoda melanoleuca (giant panda) ]

    Gene ID: 100484897, updated on 8-Mar-2024

    Summary

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    Gene symbol
    SYCP1
    Gene description
    synaptonemal complex protein 1
    Locus tag
    PANDA_018645
    See related
    Ensembl:ENSAMEG00000017087
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ailuropoda melanoleuca
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
    Orthologs
    human mouse all
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    Genomic context

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    See SYCP1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    103 current ASM200744v2 (GCF_002007445.1) 2 NC_048219.1 (81169632..81299712)
    102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003218838.1 (18920..150853, complement)

    Chromosome 2 - NC_048219.1Genomic Context describing neighboring genes Neighboring gene suppressor of IKBKE 1 Neighboring gene bile acid receptor-like Neighboring gene dnaJ homolog subfamily A member 1-like Neighboring gene 60S ribosomal protein L12-like Neighboring gene thyroid stimulating hormone subunit beta Neighboring gene tetraspanin 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chiasma assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lateral element assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in meiotic DNA repair synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in synaptonemal complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in central element IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in male germ cell nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptonemal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in transverse filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    synaptonemal complex protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM200744v2 Primary Assembly

    Genomic

    1. NC_048219.1 Reference ASM200744v2 Primary Assembly

      Range
      81169632..81299712
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034644004.1 → XP_034499895.1  synaptonemal complex protein 1

      UniProtKB/TrEMBL
      A0A7N5JR24, A0A7N5P6K1, D2I0G0
      Related
      ENSAMEP00000029077.1, ENSAMET00000041595.1
    Nucleotide Protein
    Heading Accession and Version

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