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    SATB2 SATB homeobox 2 [ Ailuropoda melanoleuca (giant panda) ]

    Gene ID: 100469819, updated on 8-Mar-2024

    Summary

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    Gene symbol
    SATB2
    Gene description
    SATB homeobox 2
    Locus tag
    PANDA_003907
    See related
    Ensembl:ENSAMEG00000005350
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ailuropoda melanoleuca
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current ASM200744v2 (GCF_002007445.1) 2 NC_048219.1 (164017104..164208498, complement)
    102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217395.1 (740597..922689, complement)

    Chromosome 2 - NC_048219.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene 40S ribosomal protein S15a-like Neighboring gene formiminotransferase cyclodeaminase N-terminal like Neighboring gene chromosome 2 C2orf69 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-binding protein SATB2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM200744v2 Primary Assembly

    Genomic

    1. NC_048219.1 Reference ASM200744v2 Primary Assembly

      Range
      164017104..164208498 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034654917.1 → XP_034510808.1  DNA-binding protein SATB2 isoform X2

      UniProtKB/TrEMBL
      D2H2P0
      Conserved Domains (4) summary
      smart00389
      Location:556 → 613
      HOX; Homeodomain
      cd11585
      Location:2 → 97
      SATB1_N; N-terminal domain of SATB1 and similar proteins
      pfam02376
      Location:419 → 498
      CUT; CUT domain
      pfam16557
      Location:104 → 175
      CUTL; CUT1-like DNA-binding domain of SATB

    2. XM_034654915.1 → XP_034510806.1  DNA-binding protein SATB2 isoform X1

      UniProtKB/TrEMBL
      D2H2P0, G1LFI4
      Conserved Domains (4) summary
      smart00389
      Location:614 → 671
      HOX; Homeodomain
      cd11585
      Location:60 → 155
      SATB1_N; N-terminal domain of SATB1 and similar proteins
      pfam02376
      Location:477 → 556
      CUT; CUT domain
      pfam16557
      Location:162 → 232
      CUTL; CUT1-like DNA-binding domain of SATB

    3. XM_034654916.1 → XP_034510807.1  DNA-binding protein SATB2 isoform X1

      UniProtKB/TrEMBL
      D2H2P0, G1LFI4
      Conserved Domains (4) summary
      smart00389
      Location:614 → 671
      HOX; Homeodomain
      cd11585
      Location:60 → 155
      SATB1_N; N-terminal domain of SATB1 and similar proteins
      pfam02376
      Location:477 → 556
      CUT; CUT domain
      pfam16557
      Location:162 → 232
      CUTL; CUT1-like DNA-binding domain of SATB

    4. XM_034654914.1 → XP_034510805.1  DNA-binding protein SATB2 isoform X1

      UniProtKB/TrEMBL
      D2H2P0, G1LFI4
      Related
      ENSAMEP00000005672.2, ENSAMET00000005910.2
      Conserved Domains (4) summary
      smart00389
      Location:614 → 671
      HOX; Homeodomain
      cd11585
      Location:60 → 155
      SATB1_N; N-terminal domain of SATB1 and similar proteins
      pfam02376
      Location:477 → 556
      CUT; CUT domain
      pfam16557
      Location:162 → 232
      CUTL; CUT1-like DNA-binding domain of SATB
    Nucleotide Protein
    Heading Accession and Version

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