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    ERLIN2 ER lipid raft associated 2 [ Ailuropoda melanoleuca (giant panda) ]

    Gene ID: 100468740, updated on 8-Mar-2024

    Summary

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    Gene symbol
    ERLIN2
    Gene description
    ER lipid raft associated 2
    Locus tag
    PANDA_005478
    See related
    Ensembl:ENSAMEG00000010922
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ailuropoda melanoleuca
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 18
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    103 current ASM200744v2 (GCF_002007445.1) 18 NC_048235.1 (34439024..34454177, complement)
    102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217475.1 (1781641..1796649)

    Chromosome 18 - NC_048235.1Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor A2 Neighboring gene uncharacterized LOC117797095 Neighboring gene pyridoxal phosphate binding protein Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene zinc finger protein 703 Neighboring gene uncharacterized LOC117797079

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cholesterol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in SREBP signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    erlin-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM200744v2 Primary Assembly

    Genomic

    1. NC_048235.1 Reference ASM200744v2 Primary Assembly

      Range
      34439024..34454177 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002917224.3 → XP_002917270.1  erlin-2 isoform X1

      See identical proteins and their annotated locations for XP_002917270.1

      UniProtKB/TrEMBL
      D2H695, G1LWR3
      Related
      ENSAMEP00000011516.2, ENSAMET00000012007.2
      Conserved Domains (2) summary
      smart00244
      Location:21 → 187
      PHB; prohibitin homologues
      cd03406
      Location:16 → 308
      SPFH_like_u3; Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily

    2. XM_019797477.2 → XP_019653036.1  erlin-2 isoform X1

      UniProtKB/TrEMBL
      D2H695, G1LWR3

    3. XM_019797478.2 → XP_019653037.1  erlin-2 isoform X1

      UniProtKB/TrEMBL
      D2H695, G1LWR3

    4. XM_034647562.1 → XP_034503453.1  erlin-2 isoform X2

    5. XM_034647563.1 → XP_034503454.1  erlin-2 isoform X3

    6. XM_034647564.1 → XP_034503455.1  erlin-2 isoform X4

    Nucleotide Protein
    Heading Accession and Version

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