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    IRF3 interferon regulatory factor 3 [ Pongo abelii (Sumatran orangutan) ]

    Gene ID: 100441280, updated on 3-Apr-2024

    Summary

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    Gene symbol
    IRF3
    Gene description
    interferon regulatory factor 3
    Locus tag
    CR201_G0029653
    See related
    Ensembl:ENSPPYG00000010260
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pongo abelii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 20
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 20 NC_072005.2 (55860989..55867418, complement)
    RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 19 NC_072004.1 (62217720..62224133, complement)

    Chromosome 20 - NC_072005.2Genomic Context describing neighboring genes Neighboring gene RAS related Neighboring gene SR-related CTD associated factor 1 Neighboring gene BCL2 like 12 Neighboring gene uncharacterized LOC134760726

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in immune system process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    interferon regulatory factor 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Genomic

    1. NC_072005.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

      Range
      55860989..55867418 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024236809.3 → XP_024092577.1  interferon regulatory factor 3 isoform X2

      UniProtKB/TrEMBL
      A0A2J8U899, A0A6D2X141, H2NZP2
      Related
      ENSPPYP00000011485.2
      Conserved Domains (2) summary
      pfam00605
      Location:7 → 110
      IRF; Interferon regulatory factor transcription factor
      pfam10401
      Location:202 → 380
      IRF-3; Interferon-regulatory factor 3

    2. XM_009232904.4 → XP_009231179.1  interferon regulatory factor 3 isoform X2

      See identical proteins and their annotated locations for XP_009231179.1

      UniProtKB/TrEMBL
      A0A2J8U899, A0A6D2X141, H2NZP2
      Conserved Domains (2) summary
      pfam00605
      Location:7 → 110
      IRF; Interferon regulatory factor transcription factor
      pfam10401
      Location:202 → 380
      IRF-3; Interferon-regulatory factor 3

    3. XM_054540987.2 → XP_054396962.1  interferon regulatory factor 3 isoform X3

      UniProtKB/TrEMBL
      A0A2J8U891

    4. XM_009232903.4 → XP_009231178.1  interferon regulatory factor 3 isoform X1

      See identical proteins and their annotated locations for XP_009231178.1

      UniProtKB/TrEMBL
      A0A2J8U895, A0A8I5T7H1
      Conserved Domains (2) summary
      pfam00605
      Location:7 → 110
      IRF; Interferon regulatory factor transcription factor
      pfam10401
      Location:202 → 326
      IRF-3; Interferon-regulatory factor 3

    5. XM_024236807.3 → XP_024092575.1  interferon regulatory factor 3 isoform X1

      UniProtKB/TrEMBL
      A0A2J8U895, A0A8I5T7H1
      Related
      ENSPPYP00000029645.1
      Conserved Domains (2) summary
      pfam00605
      Location:7 → 110
      IRF; Interferon regulatory factor transcription factor
      pfam10401
      Location:202 → 326
      IRF-3; Interferon-regulatory factor 3

    6. XM_063720209.1 → XP_063576279.1  interferon regulatory factor 3 isoform X4

    Nucleotide Protein
    Heading Accession and Version

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