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    LOC100437308 caspase-5 [ Pongo abelii (Sumatran orangutan) ]

    Gene ID: 100437308, updated on 26-Mar-2024

    Summary

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    Gene symbol
    LOC100437308
    Gene description
    caspase-5
    Locus tag
    CR201_G0025525
    See related
    Ensembl:ENSPPYG00000003825
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pongo abelii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Also known as
    CASP5
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 9 NC_071994.2 (108071301..108095619, complement)
    RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 11 NC_071996.1 (104505791..104521663, complement)

    Chromosome 9 - NC_071994.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100436548 Neighboring gene caspase 4 Neighboring gene uncharacterized LOC103891898 Neighboring gene caspase-1 Neighboring gene caspase recruitment domain family member 16

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables caspase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of inflammatory response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of AIM2 inflammasome complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of IPAF inflammasome complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of NLRP3 inflammasome complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    caspase-5
    Names
    caspase 5, apoptosis-related cysteine peptidase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Genomic

    1. NC_071994.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

      Range
      108071301..108095619 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003777877.4 → XP_003777925.3  caspase-5 isoform X1

    2. XM_063711351.1 → XP_063567421.1  caspase-5 isoform X2

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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