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    HDC histidine decarboxylase [ Pongo abelii (Sumatran orangutan) ]

    Gene ID: 100435706, updated on 26-Mar-2024

    Summary

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    Gene symbol
    HDC
    Gene description
    histidine decarboxylase
    Locus tag
    CR201_G0020144
    See related
    Ensembl:ENSPPYG00000006467
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pongo abelii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 16
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 16 NC_072001.2 (53188428..53212835, complement)
    RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 15 NC_072000.1 (50468090..50492491, complement)

    Chromosome 16 - NC_072001.2Genomic Context describing neighboring genes Neighboring gene ATPase phospholipid transporting 8B4 (putative) Neighboring gene large ribosomal subunit protein uL11-like Neighboring gene solute carrier family 27 member 2 Neighboring gene GA binding protein transcription factor subunit beta 1 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC134760206

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histidine decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in histamine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in histidine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histidine decarboxylase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Genomic

    1. NC_072001.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

      Range
      53188428..53212835 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002825439.5 → XP_002825485.2  histidine decarboxylase isoform X2

      UniProtKB/TrEMBL
      A0A2J8VBI8, A0A8I5UW28
      Related
      ENSPPYP00000041938.1
      Conserved Domains (1) summary
      pfam00282
      Location:36 → 381
      Pyridoxal_deC; Pyridoxal-dependent decarboxylase conserved domain

    2. XM_054531457.2 → XP_054387432.1  histidine decarboxylase isoform X4

    3. XM_002825438.5 → XP_002825484.2  histidine decarboxylase isoform X1

      UniProtKB/TrEMBL
      A0A2J8VBJ8, H2NN75
      Related
      ENSPPYP00000007330.3
      Conserved Domains (1) summary
      pfam00282
      Location:36 → 414
      Pyridoxal_deC; Pyridoxal-dependent decarboxylase conserved domain

    4. XM_063716144.1 → XP_063572214.1  histidine decarboxylase isoform X3

    Nucleotide Protein
    Heading Accession and Version

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