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    IKZF2 IKAROS family zinc finger 2 [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100403694, updated on 3-Apr-2024

    Summary

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    Gene symbol
    IKZF2
    Gene description
    IKAROS family zinc finger 2
    See related
    Ensembl:ENSCJAG00000011409
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 6 NC_071447.1 (131210833..131381539, complement)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 6 NC_048388.1 (132420733..132591428, complement)

    Chromosome 6 - NC_071447.1Genomic Context describing neighboring genes Neighboring gene erb-b2 receptor tyrosine kinase 4 Neighboring gene PC-esterase domain-containing protein 1B-like Neighboring gene uncharacterized LOC118154659 Neighboring gene sperm associated antigen 16 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein Helios

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071447.1 Reference mCalJa1.2.pat.X

      Range
      131210833..131381539 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035305604.2 → XP_035161495.1  zinc finger protein Helios isoform X1

      UniProtKB/TrEMBL
      F6PVQ0
      Conserved Domains (2) summary
      sd00017
      Location:121 → 141
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:161 → 186
      zf-H2C2_2; Zinc-finger double domain

    2. XM_008999422.3 → XP_008997670.1  zinc finger protein Helios isoform X4

      See identical proteins and their annotated locations for XP_008997670.1

      UniProtKB/TrEMBL
      F6PVQ0, F6PVT5, U3B8I2
      Conserved Domains (2) summary
      sd00017
      Location:114 → 134
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:154 → 179
      zf-H2C2_2; Zinc-finger double domain

    3. XM_008999420.4 → XP_008997668.1  zinc finger protein Helios isoform X3

      See identical proteins and their annotated locations for XP_008997668.1

      UniProtKB/TrEMBL
      F6PVQ0
      Conserved Domains (2) summary
      sd00017
      Location:115 → 135
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:155 → 180
      zf-H2C2_2; Zinc-finger double domain

    4. XM_035305606.2 → XP_035161497.1  zinc finger protein Helios isoform X3

      UniProtKB/TrEMBL
      F6PVQ0
      Conserved Domains (2) summary
      sd00017
      Location:115 → 135
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:155 → 180
      zf-H2C2_2; Zinc-finger double domain

    5. XM_054257911.1 → XP_054113886.1  zinc finger protein Helios isoform X9

    6. XM_054257910.1 → XP_054113885.1  zinc finger protein Helios isoform X8

    7. XM_035305608.2 → XP_035161499.1  zinc finger protein Helios isoform X5

      UniProtKB/TrEMBL
      F6PVQ0
      Conserved Domains (3) summary
      COG5048
      Location:114 → 188
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:123 → 143
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:135 → 160
      zf-H2C2_2; Zinc-finger double domain

    8. XM_035305609.2 → XP_035161500.1  zinc finger protein Helios isoform X6

      UniProtKB/TrEMBL
      F6PVQ0
      Conserved Domains (3) summary
      COG5048
      Location:113 → 187
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:122 → 142
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:134 → 159
      zf-H2C2_2; Zinc-finger double domain

    9. XM_035305605.2 → XP_035161496.1  zinc finger protein Helios isoform X2

      UniProtKB/TrEMBL
      F6PVQ0
      Conserved Domains (2) summary
      sd00017
      Location:120 → 140
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:160 → 185
      zf-H2C2_2; Zinc-finger double domain

    10. XM_035305607.2 → XP_035161498.1  zinc finger protein Helios isoform X4

      UniProtKB/TrEMBL
      F6PVQ0, F6PVT5, U3B8I2
      Conserved Domains (2) summary
      sd00017
      Location:114 → 134
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:154 → 179
      zf-H2C2_2; Zinc-finger double domain

    11. XM_054257909.1 → XP_054113884.1  zinc finger protein Helios isoform X7

      UniProtKB/TrEMBL
      A0A8I3WDV1
    Nucleotide Protein
    Heading Accession and Version

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