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    KDM1B lysine demethylase 1B [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100401095, updated on 8-Mar-2024

    Summary

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    Gene symbol
    KDM1B
    Gene description
    lysine demethylase 1B
    See related
    Ensembl:ENSCJAG00000006934
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 4 NC_071445.1 (11165321..11271159, complement)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 4 NC_048386.1 (10847078..10952997, complement)

    Chromosome 4 - NC_071445.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 144B Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC128931915 Neighboring gene DEK proto-oncogene Neighboring gene spidroin-2-like Neighboring gene thiopurine S-methyltransferase Neighboring gene NHL repeat containing E3 ubiquitin protein ligase 1 Neighboring gene kinesin family member 13A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysine-specific histone demethylase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071445.1 Reference mCalJa1.2.pat.X

      Range
      11165321..11271159 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035294803.2 → XP_035150694.1  lysine-specific histone demethylase 2 isoform X1

      UniProtKB/TrEMBL
      A0A8I3WL33, A0A8I3X5I2
      Conserved Domains (2) summary
      PLN02328
      Location:403 → 920
      PLN02328; lysine-specific histone demethylase 1 homolog
      pfam07496
      Location:239 → 292
      zf-CW; CW-type Zinc Finger

    2. XM_035294808.2 → XP_035150699.1  lysine-specific histone demethylase 2 isoform X3

      UniProtKB/TrEMBL
      F6U7F2
      Conserved Domains (2) summary
      PLN02328
      Location:302 → 819
      PLN02328; lysine-specific histone demethylase 1 homolog
      pfam07496
      Location:138 → 191
      zf-CW; CW-type Zinc Finger

    3. XM_035294806.2 → XP_035150697.1  lysine-specific histone demethylase 2 isoform X3

      UniProtKB/TrEMBL
      F6U7F2
      Conserved Domains (2) summary
      PLN02328
      Location:302 → 819
      PLN02328; lysine-specific histone demethylase 1 homolog
      pfam07496
      Location:138 → 191
      zf-CW; CW-type Zinc Finger

    4. XM_035294809.2 → XP_035150700.1  lysine-specific histone demethylase 2 isoform X3

      UniProtKB/TrEMBL
      F6U7F2
      Conserved Domains (2) summary
      PLN02328
      Location:302 → 819
      PLN02328; lysine-specific histone demethylase 1 homolog
      pfam07496
      Location:138 → 191
      zf-CW; CW-type Zinc Finger

    5. XM_035294804.2 → XP_035150695.1  lysine-specific histone demethylase 2 isoform X2

      UniProtKB/TrEMBL
      A0A8I3WL33
      Conserved Domains (2) summary
      PLN02328
      Location:401 → 918
      PLN02328; lysine-specific histone demethylase 1 homolog
      pfam07496
      Location:239 → 292
      zf-CW; CW-type Zinc Finger

    6. XM_035294807.2 → XP_035150698.1  lysine-specific histone demethylase 2 isoform X3

      UniProtKB/TrEMBL
      F6U7F2
      Conserved Domains (2) summary
      PLN02328
      Location:302 → 819
      PLN02328; lysine-specific histone demethylase 1 homolog
      pfam07496
      Location:138 → 191
      zf-CW; CW-type Zinc Finger
    Nucleotide Protein
    Heading Accession and Version

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