U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    TDRD9 tudor domain containing 9 [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100399710, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    TDRD9
    Gene description
    tudor domain containing 9
    See related
    Ensembl:ENSCJAG00000017235
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TDRD9 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    38
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 10 NC_071451.1 (134670455..134811015)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 10 NC_048392.1 (135306485..135446989)

    Chromosome 10 - NC_071451.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory subunit 13B Neighboring gene small nucleolar RNA SNORD51 Neighboring gene uncharacterized LOC108593581 Neighboring gene RD3 like Neighboring gene translation initiation factor IF-2-like Neighboring gene asparaginase

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular anatomical structure IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ATP-dependent RNA helicase TDRD9

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071451.1 Reference mCalJa1.2.pat.X

      Range
      134670455..134811015
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035261663.2 → XP_035117554.1  ATP-dependent RNA helicase TDRD9 isoform X1

      UniProtKB/TrEMBL
      F7HS06
      Conserved Domains (2) summary
      COG1643
      Location:128 → 769
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
      cd20431
      Location:901 → 1001
      Tudor_TDRD9; Tudor domain found in Tudor domain-containing protein 9 (TDRD9) and similar proteins

    2. XM_035261669.2 → XP_035117560.1  ATP-dependent RNA helicase TDRD9 isoform X3

      Conserved Domains (2) summary
      COG1643
      Location:19 → 511
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
      cd20431
      Location:643 → 743
      Tudor_TDRD9; Tudor domain found in Tudor domain-containing protein 9 (TDRD9) and similar proteins

    3. XM_035261664.2 → XP_035117555.1  ATP-dependent RNA helicase TDRD9 isoform X2

      Conserved Domains (2) summary
      COG1643
      Location:1 → 544
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
      cd20431
      Location:676 → 776
      Tudor_TDRD9; Tudor domain found in Tudor domain-containing protein 9 (TDRD9) and similar proteins

    4. XM_035261666.2 → XP_035117557.1  ATP-dependent RNA helicase TDRD9 isoform X2

      Conserved Domains (2) summary
      COG1643
      Location:1 → 544
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
      cd20431
      Location:676 → 776
      Tudor_TDRD9; Tudor domain found in Tudor domain-containing protein 9 (TDRD9) and similar proteins

    5. XM_035261668.2 → XP_035117559.1  ATP-dependent RNA helicase TDRD9 isoform X2

      Conserved Domains (2) summary
      COG1643
      Location:1 → 544
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
      cd20431
      Location:676 → 776
      Tudor_TDRD9; Tudor domain found in Tudor domain-containing protein 9 (TDRD9) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.