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    CAPN5 calpain 5 [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100394779, updated on 3-Apr-2024

    Summary

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    Gene symbol
    CAPN5
    Gene description
    calpain 5
    See related
    Ensembl:ENSCJAG00000015126
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Also known as
    calpain-5
    Orthologs
    human mouse all
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    Genomic context

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    See CAPN5 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 11 NC_071452.1 (60537132..60595447, complement)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 11 NC_048393.1 (61752956..61811308, complement)

    Chromosome 11 - NC_071452.1Genomic Context describing neighboring genes Neighboring gene glycerophosphodiester phosphodiesterase domain containing 4 Neighboring gene ribosomal protein S7 pseudogene Neighboring gene myosin VIIA Neighboring gene uncharacterized LOC118145781 Neighboring gene olfactory marker protein Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 Neighboring gene U6 spliceosomal RNA Neighboring gene alkaline ceramidase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium-dependent cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calpain-5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071452.1 Reference mCalJa1.2.pat.X

      Range
      60537132..60595447 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009007388.4 → XP_009005636.3  calpain-5 isoform X1

      UniProtKB/TrEMBL
      U3D7U5

    2. XM_035265354.2 → XP_035121245.2  calpain-5 isoform X2

    RNA

    1. XR_004731214.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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