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    NAV2 neuron navigator 2 [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100388490, updated on 3-Apr-2024

    Summary

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    Gene symbol
    NAV2
    Gene description
    neuron navigator 2
    See related
    Ensembl:ENSCJAG00000006739
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 11
    Exon count:
    49
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 11 NC_071452.1 (81857580..82626552)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 11 NC_048393.1 (83036635..83805509)

    Chromosome 11 - NC_071452.1Genomic Context describing neighboring genes Neighboring gene proliferating cell nuclear antigen-like Neighboring gene E2F transcription factor 8 Neighboring gene tigger transposable element-derived protein 1-like Neighboring gene U6 spliceosomal RNA Neighboring gene small nucleolar RNA SNORA1 Neighboring gene uncharacterized LOC118145605 Neighboring gene 60S ribosomal protein L26-like Neighboring gene 10 kDa heat shock protein, mitochondrial-like Neighboring gene uncharacterized LOC103796244 Neighboring gene RAB1B, member RAS oncogene family Neighboring gene developing brain homeobox 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neurogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neuron navigator 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071452.1 Reference mCalJa1.2.pat.X

      Range
      81857580..82626552
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054242157.1 → XP_054098132.1  neuron navigator 2 isoform X6

    2. XM_054242158.1 → XP_054098133.1  neuron navigator 2 isoform X6

    3. XM_035264232.2 → XP_035120123.1  neuron navigator 2 isoform X9

      UniProtKB/TrEMBL
      F6QLA4, F7GXR3
      Conserved Domains (3) summary
      PHA03247
      Location:161 → 540
      PHA03247; large tegument protein UL36; Provisional
      pfam13401
      Location:2024 → 2117
      AAA_22; AAA domain
      cd21285
      Location:15 → 126
      CH_NAV2; calponin homology (CH) domain found in neuron navigator 2

    4. XM_054242162.1 → XP_054098137.1  neuron navigator 2 isoform X10

    5. XM_054242165.1 → XP_054098140.1  neuron navigator 2 isoform X12

    6. XM_035264219.2 → XP_035120110.1  neuron navigator 2 isoform X1

      UniProtKB/TrEMBL
      A0A2R8MAE1, A0A2R8MJ45
      Conserved Domains (4) summary
      TIGR04523
      Location:1654 → 1923
      Mplasa_alph_rch; helix-rich Mycoplasma protein
      pfam05109
      Location:302 → 738
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam13401
      Location:2111 → 2204
      AAA_22; AAA domain
      cd21285
      Location:77 → 190
      CH_NAV2; calponin homology (CH) domain found in neuron navigator 2

    7. XM_054242155.1 → XP_054098130.1  neuron navigator 2 isoform X2

      UniProtKB/TrEMBL
      A0A2R8PB73

    8. XM_035264227.2 → XP_035120118.1  neuron navigator 2 isoform X4

      UniProtKB/TrEMBL
      A0A2R8MJ45, A0A2R8PA73
      Conserved Domains (4) summary
      TIGR04523
      Location:1617 → 1886
      Mplasa_alph_rch; helix-rich Mycoplasma protein
      pfam05109
      Location:302 → 738
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam13401
      Location:2074 → 2167
      AAA_22; AAA domain
      cd21285
      Location:77 → 190
      CH_NAV2; calponin homology (CH) domain found in neuron navigator 2

    9. XM_035264225.2 → XP_035120116.1  neuron navigator 2 isoform X3

      UniProtKB/TrEMBL
      U3F5P1
      Conserved Domains (4) summary
      PHA03247
      Location:225 → 604
      PHA03247; large tegument protein UL36; Provisional
      TIGR04523
      Location:1631 → 1900
      Mplasa_alph_rch; helix-rich Mycoplasma protein
      pfam13401
      Location:2088 → 2181
      AAA_22; AAA domain
      cd21285
      Location:77 → 190
      CH_NAV2; calponin homology (CH) domain found in neuron navigator 2

    10. XM_054242156.1 → XP_054098131.1  neuron navigator 2 isoform X5

    11. XM_054242160.1 → XP_054098135.1  neuron navigator 2 isoform X8

    12. XM_054242161.1 → XP_054098136.1  neuron navigator 2 isoform X10

    13. XM_054242159.1 → XP_054098134.1  neuron navigator 2 isoform X7

    14. XM_054242163.1 → XP_054098138.1  neuron navigator 2 isoform X11

    15. XM_054242164.1 → XP_054098139.1  neuron navigator 2 isoform X11

    RNA

    1. XR_008475190.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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