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    PLXDC1 plexin domain containing 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100386999, updated on 3-Apr-2024

    Summary

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    Gene symbol
    PLXDC1
    Gene description
    plexin domain containing 1
    See related
    Ensembl:ENSCJAG00000008380
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
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    Genomic context

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    See PLXDC1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 5 NC_071446.1 (115647777..115731777, complement)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 5 NC_048387.1 (118371235..118455216, complement)

    Chromosome 5 - NC_071446.1Genomic Context describing neighboring genes Neighboring gene high mobility group protein B1-like Neighboring gene leucine-rich repeat-containing protein 37A2-like Neighboring gene uncharacterized LOC128932266 Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene ADP ribosylation factor like GTPase 5C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    plexin domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071446.1 Reference mCalJa1.2.pat.X

      Range
      115647777..115731777 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035303311.2 → XP_035159202.1  plexin domain-containing protein 1 isoform X5

      Conserved Domains (1) summary
      cl02648
      Location:164 → 242
      NIDO; Nidogen-like

    2. XM_008997480.4 → XP_008995728.1  plexin domain-containing protein 1 isoform X3

      Conserved Domains (1) summary
      cl02648
      Location:164 → 242
      NIDO; Nidogen-like

    3. XM_035303310.2 → XP_035159201.2  plexin domain-containing protein 1 isoform X4

    4. XM_008997479.4 → XP_008995727.2  plexin domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      F7GPE0

    5. XM_002748516.4 → XP_002748562.2  plexin domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A2R8MRN2
    Nucleotide Protein
    Heading Accession and Version

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