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    ITGA3 integrin subunit alpha 3 [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100386753, updated on 3-Apr-2024

    Summary

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    Gene symbol
    ITGA3
    Gene description
    integrin subunit alpha 3
    See related
    Ensembl:ENSCJAG00000006922
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 5 NC_071446.1 (112330107..112363809, complement)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 5 NC_048387.1 (115051626..115085346, complement)

    Chromosome 5 - NC_071446.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103793273 Neighboring gene sterile alpha motif domain containing 14 Neighboring gene pyruvate dehydrogenase kinase 2 Neighboring gene PDZ and LIM domain protein 1-like Neighboring gene distal-less homeobox 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables integrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell adhesion mediated by integrin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-matrix adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in integrin-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in leukocyte migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in external side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of integrin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    integrin alpha-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071446.1 Reference mCalJa1.2.pat.X

      Range
      112330107..112363809 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002748439.5 → XP_002748485.1  integrin alpha-3 isoform X1

      See identical proteins and their annotated locations for XP_002748485.1

      UniProtKB/TrEMBL
      F6S164, U3C367
      Related
      ENSCJAP00000012925.2
      Conserved Domains (2) summary
      smart00191
      Location:365 → 417
      Int_alpha; Integrin alpha (beta-propellor repeats)
      pfam08441
      Location:462 → 916
      Integrin_alpha2; Integrin alpha

    2. XM_035301276.2 → XP_035157167.1  integrin alpha-3 isoform X3

      UniProtKB/TrEMBL
      U3C367
      Conserved Domains (2) summary
      smart00191
      Location:309 → 361
      Int_alpha; Integrin alpha (beta-propellor repeats)
      pfam08441
      Location:406 → 860
      Integrin_alpha2; Integrin alpha

    3. XM_054256280.1 → XP_054112255.1  integrin alpha-3 isoform X4

    4. XM_035301277.2 → XP_035157168.1  integrin alpha-3 isoform X5

      UniProtKB/TrEMBL
      U3C367
      Conserved Domains (2) summary
      smart00191
      Location:244 → 296
      Int_alpha; Integrin alpha (beta-propellor repeats)
      pfam08441
      Location:341 → 795
      Integrin_alpha2; Integrin alpha

    5. XM_008997388.5 → XP_008995636.1  integrin alpha-3 isoform X2

      UniProtKB/TrEMBL
      F7GGD3, U3C367
      Related
      ENSCJAP00000012941.1
      Conserved Domains (2) summary
      smart00191
      Location:365 → 417
      Int_alpha; Integrin alpha (beta-propellor repeats)
      pfam08441
      Location:462 → 916
      Integrin_alpha2; Integrin alpha
    Nucleotide Protein
    Heading Accession and Version

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