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    tsc1 TSC complex subunit 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100380126, updated on 8-Mar-2024

    Summary

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    Official Symbol
    tsc1provided by Xenbase
    Official Full Name
    TSC complex subunit 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-987982
    See related
    Ensembl:ENSXETG00000006262
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    lam; tsc; hamartin
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (11405954..11437356)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (7104280..7134985, complement)

    Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene general transcription factor IIIC subunit 5 Neighboring gene growth factor independent 1B transcription repressor Neighboring gene sperm acrosome associated 9 Neighboring gene adenylate kinase 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    hamartin
    Names
    tuberous sclerosis 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      11405954..11437356
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031890978.1 → XP_031746838.1  hamartin isoform X1

      UniProtKB/TrEMBL
      A0A6I8RQS4, A0A7D9NJL0
      Conserved Domains (2) summary
      COG1196
      Location:668 → 966
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam04388
      Location:7 → 707
      Hamartin; Hamartin protein

    2. XM_031890981.1 → XP_031746841.1  hamartin isoform X2

      UniProtKB/TrEMBL
      A0A7D9NJL0, A0A8J1IQR2
      Conserved Domains (2) summary
      COG1196
      Location:667 → 965
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam04388
      Location:7 → 706
      Hamartin; Hamartin protein

    3. XM_031890982.1 → XP_031746842.1  hamartin isoform X3

      UniProtKB/TrEMBL
      A0A6I8R8Z6, A0A6I8RJL3, A0A6I8SIS4, A0A7D9NJL0
      Related
      ENSXETP00000077141.2, ENSXETT00000098763.2
      Conserved Domains (2) summary
      COG1196
      Location:661 → 959
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam04388
      Location:7 → 700
      Hamartin; Hamartin protein

    4. XM_031890983.1 → XP_031746843.1  hamartin isoform X4

      UniProtKB/TrEMBL
      A0A7D9NJL0, A0A8J1IMQ7
      Conserved Domains (2) summary
      COG1196
      Location:660 → 958
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam04388
      Location:7 → 699
      Hamartin; Hamartin protein

    5. XM_031890979.1 → XP_031746839.1  hamartin isoform X1

      UniProtKB/TrEMBL
      A0A6I8RQS4, A0A7D9NJL0
      Related
      ENSXETP00000082945.2, ENSXETT00000069815.2
      Conserved Domains (2) summary
      COG1196
      Location:668 → 966
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam04388
      Location:7 → 707
      Hamartin; Hamartin protein

    6. XM_031890980.1 → XP_031746840.1  hamartin isoform X1

      UniProtKB/TrEMBL
      A0A6I8RQS4, A0A7D9NJL0
      Conserved Domains (2) summary
      COG1196
      Location:668 → 966
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam04388
      Location:7 → 707
      Hamartin; Hamartin protein
    Nucleotide Protein Strain
    Heading Accession and Version

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