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    VIT vitrin [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100339458, updated on 8-Mar-2024

    Summary

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    Gene symbol
    VIT
    Gene description
    vitrin
    See related
    Ensembl:ENSOCUG00000007249
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 2 NC_067375.1 (149795228..149913907, complement)

    Chromosome 2 - NC_067375.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127490339 Neighboring gene SNRPN upstream reading frame protein-like Neighboring gene striatin Neighboring gene 60S ribosomal protein L31-like Neighboring gene uncharacterized LOC127490338 Neighboring gene fasciculation and elongation protein zeta 2 Neighboring gene cysteine rich transmembrane BMP regulator 1 Neighboring gene uncharacterized LOC103347702 Neighboring gene Y-box-binding protein 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067375.1 Chromosome 2 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in extracellular matrix organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell-substrate adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in interstitial matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vitrin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067375.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      149795228..149913907 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008254543.3 → XP_008252765.1  vitrin isoform X2

      UniProtKB/TrEMBL
      A0A5F9CU73
      Conserved Domains (3) summary
      cd01472
      Location:496 → 656
      vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
      pfam03815
      Location:44 → 133
      LCCL; LCCL domain
      cl00057
      Location:295 → 458
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

    2. XM_008254542.3 → XP_008252764.1  vitrin isoform X1

      UniProtKB/TrEMBL
      A0A5F9C9D0, A0A5F9CU73
      Related
      ENSOCUP00000030483.1
      Conserved Domains (3) summary
      cd01472
      Location:509 → 669
      vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
      pfam03815
      Location:44 → 133
      LCCL; LCCL domain
      cl00057
      Location:308 → 471
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

    3. XM_008254546.3 → XP_008252768.1  vitrin isoform X4

      UniProtKB/TrEMBL
      A0A5F9CU73
      Conserved Domains (3) summary
      cd01472
      Location:470 → 630
      vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
      pfam03815
      Location:44 → 133
      LCCL; LCCL domain
      cl00057
      Location:269 → 432
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

    4. XM_008254544.3 → XP_008252766.1  vitrin isoform X3

      UniProtKB/TrEMBL
      A0A5F9CU73, G1SSN7
      Related
      ENSOCUP00000006270.4
      Conserved Domains (3) summary
      cd01472
      Location:483 → 643
      vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
      pfam03815
      Location:44 → 133
      LCCL; LCCL domain
      cl00057
      Location:282 → 445
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    Nucleotide Protein
    Heading Accession and Version

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