U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    SHROOM3 shroom family member 3 [ Taeniopygia guttata (zebra finch) ]

    Gene ID: 100227195, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    SHROOM3
    Gene description
    shroom family member 3
    See related
    Ensembl:ENSTGUG00000001695
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Taeniopygia guttata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current bTaeGut1.4.pri (GCF_003957565.2) 4 NC_044215.2 (66519601..66589238, complement)
    105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 4 NC_045002.1 (66883912..66961931, complement)

    Chromosome 4 - NC_044215.2Genomic Context describing neighboring genes Neighboring gene sosondowah ankyrin repeat domain family member B Neighboring gene 16 kDa beta-galactoside-binding lectin Neighboring gene uncharacterized LOC121469935 Neighboring gene starch binding domain 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in apical junction complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in apical plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cortical actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein Shroom3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bTaeGut1.4.pri Primary Assembly

    Genomic

    1. NC_044215.2 Reference bTaeGut1.4.pri Primary Assembly

      Range
      66519601..66589238 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030272185.3 → XP_030128045.3  protein Shroom3 isoform X2

      UniProtKB/TrEMBL
      H0YTY0
      Conserved Domains (2) summary
      PHA03247
      Location:1175 → 1485
      PHA03247; large tegument protein UL36; Provisional
      COG0419
      Location:1599 → 1797
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]

    2. XM_032748297.2 → XP_032604188.2  protein Shroom3 isoform X1

      UniProtKB/TrEMBL
      H0YTY0
      Conserved Domains (3) summary
      PHA03247
      Location:1175 → 1486
      PHA03247; large tegument protein UL36; Provisional
      pfam08687
      Location:1515 → 1799
      ASD2; Apx/Shroom domain ASD2
      pfam08688
      Location:709 → 886
      ASD1; Apx/Shroom domain ASD1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.