U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    STX16 syntaxin 16 [ Pongo abelii (Sumatran orangutan) ]

    Gene ID: 100174266, updated on 26-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    STX16
    Gene description
    syntaxin 16
    Locus tag
    CR201_G0031703
    See related
    Ensembl:ENSPPYG00000011175
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pongo abelii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 21
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 21 NC_072006.2 (63056809..63096760)
    RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 20 NC_072005.1 (56967787..56995612)

    Chromosome 21 - NC_072006.2Genomic Context describing neighboring genes Neighboring gene APC down-regulated 1 like Neighboring gene uncharacterized LOC129052165 Neighboring gene aminopeptidase like 1 Neighboring gene uncharacterized LOC112130368 Neighboring gene uncharacterized LOC103888840 Neighboring gene neuroendocrine secretory protein 55 Neighboring gene GNAS complex locus

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • DKFZp459J1550

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables SNARE binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle docking IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle fusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SNARE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    syntaxin-16
    Names
    STX16-NPEPL1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001133739.1 → NP_001127211.1  syntaxin-16

      See identical proteins and their annotated locations for NP_001127211.1

      Status: PROVISIONAL

      Source sequence(s)
      CR857623
      UniProtKB/TrEMBL
      H2P2F0, Q5REA9
      Related
      ENSPPYP00000012482.3, ENSPPYT00000012974.3
      Conserved Domains (2) summary
      COG5325
      Location:73 → 301
      COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
      cd15845
      Location:233 → 291
      SNARE_syntaxin16; SNARE motif of syntaxin 16

    RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Genomic

    1. NC_072006.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

      Range
      63056809..63096760
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009233752.4 → XP_009232027.1  syntaxin-16 isoform X3

      Conserved Domains (2) summary
      COG5325
      Location:69 → 297
      COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
      cd15845
      Location:229 → 287
      SNARE_syntaxin16; SNARE motif of syntaxin 16

    2. XM_009233754.4 → XP_009232029.1  syntaxin-16 isoform X5

      Conserved Domains (2) summary
      COG5325
      Location:52 → 280
      COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
      cd15845
      Location:212 → 270
      SNARE_syntaxin16; SNARE motif of syntaxin 16

    3. XM_063720451.1 → XP_063576521.1  syntaxin-16 isoform X1

    4. XM_063720452.1 → XP_063576522.1  syntaxin-16 isoform X2

    5. XM_009233753.4 → XP_009232028.1  syntaxin-16 isoform X4

      UniProtKB/TrEMBL
      H2P2F0
      Conserved Domains (2) summary
      COG5325
      Location:56 → 284
      COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
      cd15845
      Location:216 → 274
      SNARE_syntaxin16; SNARE motif of syntaxin 16
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.