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    PABPC5 poly(A) binding protein cytoplasmic 5 [ Pongo abelii (Sumatran orangutan) ]

    Gene ID: 100173418, updated on 26-Mar-2024

    Summary

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    Gene symbol
    PABPC5
    Gene description
    poly(A) binding protein cytoplasmic 5
    Locus tag
    CR201_G0045492
    See related
    Ensembl:ENSPPYG00000020526
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pongo abelii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: X
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) X NC_072008.2 (97045824..97049821)
    RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) X NC_072008.1 (97045828..97052410)

    Chromosome X - NC_072008.2Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC134760906 Neighboring gene TSC22 domain family protein 3-like Neighboring gene U2 spliceosomal RNA Neighboring gene protocadherin 11 X-linked Neighboring gene voltage-dependent anion-selective channel protein 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • DKFZp459D245

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 3'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables poly(A) binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables poly(U) RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyadenylate-binding protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001132962.1 → NP_001126434.1  polyadenylate-binding protein 5

      See identical proteins and their annotated locations for NP_001126434.1

      Status: PROVISIONAL

      Source sequence(s)
      CR860292
      UniProtKB/TrEMBL
      Q5R728
      Related
      ENSPPYP00000022977.1, ENSPPYT00000023945.2
      Conserved Domains (5) summary
      COG0724
      Location:92 → 379
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12378
      Location:22 → 98
      RRM1_I_PABPs; RNA recognition motif 1 in type I polyadenylate-binding proteins
      cd12379
      Location:104 → 179
      RRM2_I_PABPs; RNA recognition motif 2 found in type I polyadenylate-binding proteins
      cd12380
      Location:198 → 277
      RRM3_I_PABPs; RNA recognition motif 3 found in type I polyadenylate-binding proteins
      cl17169
      Location:301 → 377
      RRM_SF; RNA recognition motif (RRM) superfamily

    RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Genomic

    1. NC_072008.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

      Range
      97045824..97049821
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009235027.4 → XP_009233302.1  polyadenylate-binding protein 5 isoform X1

      See identical proteins and their annotated locations for XP_009233302.1

      UniProtKB/TrEMBL
      A0A2J8S8G9, A0A6D2WG45, H2PW70
      Conserved Domains (1) summary
      TIGR01628
      Location:22 → 379
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    Nucleotide Protein
    Heading Accession and Version

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