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    MATN2 matrilin 2 [ Sus scrofa (pig) ]

    Gene ID: 100155607, updated on 8-Mar-2024

    Summary

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    Official Symbol
    MATN2provided by VGNC
    Official Full Name
    matrilin 2provided by VGNC
    Primary source
    VGNC:VGNC:90043
    See related
    Ensembl:ENSSSCG00000006082
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Biased expression in ovary (RPKM 136.9), subcutaneous adipose (RPKM 28.1) and 2 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (38744025..38915083, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (41732770..41874322, complement)

    Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene glutamate rich 5 Neighboring gene ribosomal protein L30 Neighboring gene lysosomal protein transmembrane 4 beta Neighboring gene small ubiquitin-related modifier 2-like Neighboring gene metadherin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    matrilin-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

      Range
      38744025..38915083 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021089066.1 → XP_020944725.1  matrilin-2 isoform X1

      UniProtKB/TrEMBL
      A0A287AXD3, A0A8D0U9T4
      Related
      ENSSSCP00000048807.2, ENSSSCT00000048272.2
      Conserved Domains (4) summary
      cd01475
      Location:54 → 276
      vWA_Matrilin; VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. ...
      pfam10393
      Location:911 → 953
      Matrilin_ccoil; Trimeric coiled-coil oligomerization domain of matrilin
      pfam14670
      Location:324 → 359
      FXa_inhibition; Coagulation Factor Xa inhibitory site
      cl00057
      Location:652 → 892
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

    2. XM_021089067.1 → XP_020944726.1  matrilin-2 isoform X2

      UniProtKB/TrEMBL
      A0A480IVK0, A0A480MTA9, A0A4X1U105
      Conserved Domains (4) summary
      cd01475
      Location:54 → 276
      vWA_Matrilin; VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. ...
      pfam10393
      Location:892 → 934
      Matrilin_ccoil; Trimeric coiled-coil oligomerization domain of matrilin
      pfam14670
      Location:324 → 359
      FXa_inhibition; Coagulation Factor Xa inhibitory site
      cl00057
      Location:652 → 873
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

    3. XM_021089068.1 → XP_020944727.1  matrilin-2 isoform X3

      UniProtKB/TrEMBL
      A0A5G2R5N6, A0A5G2R9B8
      Conserved Domains (4) summary
      cd01475
      Location:54 → 276
      vWA_Matrilin; VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. ...
      pfam10393
      Location:870 → 912
      Matrilin_ccoil; Trimeric coiled-coil oligomerization domain of matrilin
      pfam14670
      Location:324 → 359
      FXa_inhibition; Coagulation Factor Xa inhibitory site
      cl00057
      Location:611 → 851
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

    4. XM_021089069.1 → XP_020944728.1  matrilin-2 isoform X4

      UniProtKB/TrEMBL
      A0A480Z788
      Conserved Domains (4) summary
      cd01475
      Location:54 → 276
      vWA_Matrilin; VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. ...
      pfam10393
      Location:868 → 910
      Matrilin_ccoil; Trimeric coiled-coil oligomerization domain of matrilin
      pfam14670
      Location:324 → 359
      FXa_inhibition; Coagulation Factor Xa inhibitory site
      cl00057
      Location:652 → 849
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    Nucleotide Protein
    Heading Accession and Version

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