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    M6PR mannose-6-phosphate receptor, cation dependent [ Sus scrofa (pig) ]

    Gene ID: 100154117, updated on 8-Mar-2024

    Summary

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    Official Symbol
    M6PRprovided by VGNC
    Official Full Name
    mannose-6-phosphate receptor, cation dependentprovided by VGNC
    Primary source
    VGNC:VGNC:89931
    See related
    Ensembl:ENSSSCG00000040743
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in spleen (RPKM 38.0), lung (RPKM 35.7) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (62537751..62557674)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (65378685..65390302, complement)

    Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene alpha-2-macroglobulin Neighboring gene killer cell lectin like receptor G1 Neighboring gene zinc finger protein ZFPM1-like Neighboring gene polyhomeotic homolog 1 Neighboring gene alpha-2-macroglobulin like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein domain specific binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein targeting to lysosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cation-dependent mannose-6-phosphate receptor
    Names
    insulin-like growth factor 2 receptor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

      Range
      62537751..62557674
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021092380.1 → XP_020948039.1  cation-dependent mannose-6-phosphate receptor

      UniProtKB/TrEMBL
      A0A0B8RSM9, A0A480WYK9, A0A4X1TZ08, A0A8D1ESV9, A0A8D1VY76
      Conserved Domains (1) summary
      cl26634
      Location:1 → 278
      ATG27; Autophagy-related protein 27

    2. XM_001927611.5 → XP_001927646.1  cation-dependent mannose-6-phosphate receptor

      See identical proteins and their annotated locations for XP_001927646.1

      UniProtKB/TrEMBL
      A0A0B8RSM9, A0A480WYK9, A0A4X1TZ08, A0A8D1ESV9, A0A8D1VY76
      Related
      ENSSSCP00000000703.4, ENSSSCT00000000718.5
      Conserved Domains (1) summary
      cl26634
      Location:1 → 278
      ATG27; Autophagy-related protein 27

    3. XM_021092377.1 → XP_020948036.1  cation-dependent mannose-6-phosphate receptor

      UniProtKB/TrEMBL
      A0A0B8RSM9, A0A480WYK9, A0A4X1TZ08, A0A8D1ESV9, A0A8D1VY76
      Related
      ENSSSCP00000055753.1, ENSSSCT00000050474.2
      Conserved Domains (1) summary
      cl26634
      Location:1 → 278
      ATG27; Autophagy-related protein 27

    4. XM_021092378.1 → XP_020948037.1  cation-dependent mannose-6-phosphate receptor

      UniProtKB/TrEMBL
      A0A0B8RSM9, A0A480WYK9, A0A4X1TZ08, A0A8D1ESV9, A0A8D1VY76
      Conserved Domains (1) summary
      cl26634
      Location:1 → 278
      ATG27; Autophagy-related protein 27

    5. XM_021092379.1 → XP_020948038.1  cation-dependent mannose-6-phosphate receptor

      UniProtKB/TrEMBL
      A0A0B8RSM9, A0A480WYK9, A0A4X1TZ08, A0A8D1ESV9, A0A8D1VY76
      Conserved Domains (1) summary
      cl26634
      Location:1 → 278
      ATG27; Autophagy-related protein 27
    Nucleotide Protein Strain
    Heading Accession and Version

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