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    SNX1 sorting nexin 1 [ Sus scrofa (pig) ]

    Gene ID: 100153561, updated on 8-Mar-2024

    Summary

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    Official Symbol
    SNX1provided by VGNC
    Official Full Name
    sorting nexin 1provided by VGNC
    Primary source
    VGNC:VGNC:112527
    See related
    Ensembl:ENSSSCG00000042703
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 14.1), lung (RPKM 11.4) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (107903954..107949920, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (118816675..118838161)

    Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene casein kinase 1 gamma 1 Neighboring gene sorting nexin 22 Neighboring gene peptidylprolyl isomerase B Neighboring gene cytosolic iron-sulfur assembly component 2A Neighboring gene death associated protein kinase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in early endosome to Golgi transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sorting nexin-1
    Names
    Sorting nexin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

      Range
      107903954..107949920 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021093910.1 → XP_020949569.1  sorting nexin-1

      UniProtKB/TrEMBL
      A0A480LB97, A0A480PZ52, A0A8D0TIU4, A0A8D1M1F9, A0A8D2C3J4
      Related
      ENSSSCP00000063925.1, ENSSSCT00000067435.2
      Conserved Domains (3) summary
      cd07281
      Location:145 → 268
      PX_SNX1; The phosphoinositide binding Phox Homology domain of Sorting Nexin 1
      cd07665
      Location:286 → 519
      BAR_SNX1; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1
      pfam03700
      Location:53 → 129
      Sorting_nexin; Sorting nexin, N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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