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    SP3 Sp3 transcription factor [ Sus scrofa (pig) ]

    Gene ID: 100153372, updated on 8-Mar-2024

    Summary

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    Official Symbol
    SP3provided by VGNC
    Official Full Name
    Sp3 transcription factorprovided by VGNC
    Primary source
    VGNC:VGNC:95511
    See related
    Ensembl:ENSSSCG00000015962
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in spleen (RPKM 26.3), lung (RPKM 25.5) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 15
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 15 NC_010457.5 (79935986..79990139, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 15 NC_010457.4 (89252305..89292992, complement)

    Chromosome 15 - NC_010457.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106508122 Neighboring gene cell division cycle associated 7 Neighboring gene uncharacterized LOC110257023 Neighboring gene Obg like ATPase 1 Neighboring gene small ubiquitin-related modifier 2 pseudogene Neighboring gene Sp9 transcription factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor Sp3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010457.5 Reference Sscrofa11.1 Primary Assembly

      Range
      79935986..79990139 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021075841.1 → XP_020931500.1  transcription factor Sp3 isoform X1

      UniProtKB/TrEMBL
      A0A5G2R6N7, A0A8D1B269
      Related
      ENSSSCP00000072000.2, ENSSSCT00000072212.2
      Conserved Domains (3) summary
      sd00017
      Location:632 → 654
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:690 → 712
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:676 → 699
      zf-H2C2_2; Zinc-finger double domain

    2. XM_021075842.1 → XP_020931501.1  transcription factor Sp3 isoform X2

      UniProtKB/TrEMBL
      A0A8D1B269
      Related
      ENSSSCP00000016915.4, ENSSSCT00000017380.5
      Conserved Domains (3) summary
      sd00017
      Location:631 → 653
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:689 → 711
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:675 → 698
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein Strain
    Heading Accession and Version

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