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    kcnd3 potassium channel, voltage gated Shal related subfamily D, member 3 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100125015, updated on 8-Mar-2024

    Summary

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    Official Symbol
    kcnd3provided by Xenbase
    Official Full Name
    potassium channel, voltage gated Shal related subfamily D, member 3provided by Xenbase
    Primary source
    Xenbase:XB-GENE-5867971
    See related
    Ensembl:ENSXETG00000013577
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    kv4.3; K(v)4.3
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (59598793..59825646, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (72889152..73114018, complement)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene inka box actin regulator 2 Neighboring gene DEAD-box helicase 20 Neighboring gene uncharacterized LOC116408683 Neighboring gene CTTNBP2 N-terminal like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables monoatomic ion channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables potassium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables voltage-gated potassium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within monoatomic ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within potassium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within potassium ion transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein homooligomerization IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in dendrite IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of monoatomic ion channel complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of voltage-gated potassium channel complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    potassium voltage-gated channel subfamily D member 3
    Names
    potassium voltage-gated channel, Shal-related subfamily, member 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102941.1 → NP_001096411.1  potassium voltage-gated channel subfamily D member 3 precursor

      See identical proteins and their annotated locations for NP_001096411.1

      Status: PROVISIONAL

      Source sequence(s)
      BC136062
      UniProtKB/TrEMBL
      A4IIK9, F6ZDS3
      Related
      ENSXETP00000029746.3, ENSXETT00000029746.5
      Conserved Domains (6) summary
      smart00225
      Location:42 → 139
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00520
      Location:217 → 412
      Ion_trans; Ion transport protein
      pfam02214
      Location:42 → 131
      BTB_2; BTB/POZ domain
      pfam07885
      Location:328 → 408
      Ion_trans_2; Ion channel
      pfam11601
      Location:3 → 28
      Shal-type; Shal-type voltage-gated potassium channels
      pfam11879
      Location:442 → 563
      DUF3399; Domain of unknown function (DUF3399)

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      59598793..59825646 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031895616.1 → XP_031751476.1  potassium voltage-gated channel subfamily D member 3 isoform X1

      UniProtKB/TrEMBL
      A0A6I8PVA3
      Related
      ENSXETP00000063201.2, ENSXETT00000063787.3
      Conserved Domains (3) summary
      cd18419
      Location:6 → 143
      BTB_POZ_KCND3; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium voltage-gated channel subfamily D member 3 (KCND3)
      pfam00520
      Location:186 → 412
      Ion_trans; Ion transport protein
      pfam11879
      Location:442 → 544
      DUF3399; Domain of unknown function (DUF3399)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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