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    PALB2 partner and localizer of BRCA2 [ Equus caballus (horse) ]

    Gene ID: 100069097, updated on 8-Mar-2024

    Summary

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    Official Symbol
    PALB2provided by VGNC
    Official Full Name
    partner and localizer of BRCA2provided by VGNC
    Primary source
    VGNC:VGNC:21140
    See related
    Ensembl:ENSECAG00000008391
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 13
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current EquCab3.0 (GCF_002863925.1) 13 NC_009156.3 (24913130..24935701)
    102 previous assembly EquCab2.0 (GCF_000002305.2) 13 NC_009156.2 (23822938..23845487)

    Chromosome 13 - NC_009156.3Genomic Context describing neighboring genes Neighboring gene endoplasmic reticulum to nucleus signaling 2 Neighboring gene polo like kinase 1 Neighboring gene dynactin subunit 5 Neighboring gene NADH:ubiquinone oxidoreductase subunit AB1 Neighboring gene ubiquitin family domain containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    partner and localizer of BRCA2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009156.3 Reference EquCab3.0 Primary Assembly

      Range
      24913130..24935701
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005598843.3 → XP_005598900.2  partner and localizer of BRCA2 isoform X1

      UniProtKB/TrEMBL
      F6TYE4
      Related
      ENSECAP00000006459.3, ENSECAT00000008605.4
      Conserved Domains (1) summary
      pfam16756
      Location:848 → 1184
      PALB2_WD40; Partner and localizer of BRCA2 WD40 domain

    2. XM_005598846.3 → XP_005598903.2  partner and localizer of BRCA2 isoform X2

      UniProtKB/TrEMBL
      A0A9L0SIC0
      Related
      ENSECAP00000073938.1, ENSECAT00000139245.1
      Conserved Domains (1) summary
      pfam16756
      Location:848 → 1067
      PALB2_WD40; Partner and localizer of BRCA2 WD40 domain

    RNA

    1. XR_002799252.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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