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    LOC100068576 ATP-dependent RNA helicase DDX19A [ Equus caballus (horse) ]

    Gene ID: 100068576, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC100068576
    Gene description
    ATP-dependent RNA helicase DDX19A
    See related
    Ensembl:ENSECAG00000051660
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Also known as
    DDX19A; DDX19B
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    Genomic context

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    See LOC100068576 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current EquCab3.0 (GCF_002863925.1) 3 NC_009146.3 (23962676..23987113, complement)
    102 previous assembly EquCab2.0 (GCF_000002305.2) 3 NC_009146.2 (23268550..23292904, complement)

    Chromosome 3 - NC_009146.3Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 2 Neighboring gene ATP-dependent RNA helicase DDX19B Neighboring gene alanyl-tRNA synthetase 1 Neighboring gene exosome component 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in poly(A)+ mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent RNA helicase DDX19A
    Names
    DEAD (Asp-Glu-Ala-As) box polypeptide 19B
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 19A
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009146.3 Reference EquCab3.0 Primary Assembly

      Range
      23962676..23987113 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001498400.6 → XP_001498450.3  ATP-dependent RNA helicase DDX19A isoform X1

      UniProtKB/TrEMBL
      A0A5F5PU62
      Related
      ENSECAP00000052215.2, ENSECAT00000068044.2
      Conserved Domains (3) summary
      PTZ00424
      Location:90 → 468
      PTZ00424; helicase 45; Provisional
      cd00079
      Location:306 → 441
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      cd00268
      Location:93 → 295
      DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...

    2. XM_023637317.1 → XP_023493085.1  ATP-dependent RNA helicase DDX19A isoform X3

      UniProtKB/TrEMBL
      A0A5F5PZV6
      Conserved Domains (2) summary
      cd18787
      Location:198 → 334
      SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
      cl28899
      Location:1 → 194
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    3. XM_023637316.1 → XP_023493084.1  ATP-dependent RNA helicase DDX19A isoform X2

      UniProtKB/TrEMBL
      A0A5F5PU62, A0A5F5PZF0
      Related
      ENSECAP00000053770.2, ENSECAT00000073418.2
      Conserved Domains (1) summary
      COG0513
      Location:77 → 465
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    Nucleotide Protein
    Heading Accession and Version

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