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    PHF6 PHD finger protein 6 [ Equus caballus (horse) ]

    Gene ID: 100054177, updated on 8-Mar-2024

    Summary

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    Official Symbol
    PHF6provided by VGNC
    Official Full Name
    PHD finger protein 6provided by VGNC
    Primary source
    VGNC:VGNC:21385
    See related
    Ensembl:ENSECAG00000013476
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: X
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current EquCab3.0 (GCF_002863925.1) X NC_009175.3 (110889782..110936434)
    102 previous assembly EquCab2.0 (GCF_000002305.2) X NC_009175.2 (106823336..106866230)

    Chromosome X - NC_009175.3Genomic Context describing neighboring genes Neighboring gene microRNA mir-106a Neighboring gene coiled-coil domain containing 160 Neighboring gene hypoxanthine phosphoribosyltransferase 1 Neighboring gene microRNA mir-450b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PHD finger protein 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009175.3 Reference EquCab3.0 Primary Assembly

      Range
      110889782..110936434
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014729195.2 → XP_014584681.1  PHD finger protein 6 isoform X3

      UniProtKB/TrEMBL
      A0A5F5PSH7
      Related
      ENSECAP00000050739.2, ENSECAT00000073674.2
      Conserved Domains (2) summary
      cd15711
      Location:179 → 296
      ePHD2_PHF6; Extended PHD finger 2 found in PHD finger protein 6 (PHF6)
      cl22851
      Location:17 → 97
      PHD_SF; PHD finger superfamily

    2. XM_005614510.3 → XP_005614567.1  PHD finger protein 6 isoform X1

      See identical proteins and their annotated locations for XP_005614567.1

      Conserved Domains (2) summary
      cd15710
      Location:17 → 131
      ePHD1_PHF6; Extended PHD finger 1 found in PHD finger protein 6 (PHF6)
      cd15711
      Location:213 → 330
      ePHD2_PHF6; Extended PHD finger 2 found in PHD finger protein 6 (PHF6)

    3. XM_014729194.2 → XP_014584680.1  PHD finger protein 6 isoform X2

      UniProtKB/TrEMBL
      F6ZMK0
      Related
      ENSECAP00000089379.1, ENSECAT00000142063.1
      Conserved Domains (2) summary
      cd15710
      Location:17 → 131
      ePHD1_PHF6; Extended PHD finger 1 found in PHD finger protein 6 (PHF6)
      cd15711
      Location:212 → 329
      ePHD2_PHF6; Extended PHD finger 2 found in PHD finger protein 6 (PHF6)

    4. XM_023634209.1 → XP_023489977.1  PHD finger protein 6 isoform X1

      Conserved Domains (2) summary
      cd15710
      Location:17 → 131
      ePHD1_PHF6; Extended PHD finger 1 found in PHD finger protein 6 (PHF6)
      cd15711
      Location:213 → 330
      ePHD2_PHF6; Extended PHD finger 2 found in PHD finger protein 6 (PHF6)
    Nucleotide Protein
    Heading Accession and Version

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